Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq294 93.3 2e-17 seq143 93.3 2e-17 >seq294 Length=160532 Score = 93.3 bits (102), Expect = 2e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || Sbjct 28745 GGAAAAGAAACTAACTAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCCCTGCA 28804 Query 61 CCGAATCCC 69 ||||||||| Sbjct 28805 CCGAATCCC 28813 Score = 93.3 bits (102), Expect = 2e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || Sbjct 46601 GGAAAAGAAACTAACTAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCCCTGCA 46660 Query 61 CCGAATCCC 69 ||||||||| Sbjct 46661 CCGAATCCC 46669 Score = 89.7 bits (98), Expect = 2e-16 Identities = 62/69 (90%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| ||||||||||||||| | ||||||||||| || Sbjct 10867 GGAAAAGAAACTAACTAGGATTCCCCTAGTAACGGCGAGTGAGC-GGGAAGAGCCCTGCA 10925 Query 61 CCGAATCCC 69 ||||||||| Sbjct 10926 CCGAATCCC 10934 >seq143 Length=4187197 Score = 93.3 bits (102), Expect = 2e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || Sbjct 4154588 GGAAAAGAAACTAACTAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCCCTGCA 4154647 Query 61 CCGAATCCC 69 ||||||||| Sbjct 4154648 CCGAATCCC 4154656 Score = 93.3 bits (102), Expect = 2e-17 Identities = 62/69 (90%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || Sbjct 4172851 GGAAAAGAAACTAACTAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCCCTGCA 4172910 Query 61 CCGAATCCC 69 ||||||||| Sbjct 4172911 CCGAATCCC 4172919 Score = 86.0 bits (94), Expect = 3e-15 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 3 AAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCGCC 62 ||||||||||||| ||||||||| |||||||||||||||| ||||||||||| || | Sbjct 614927 AAAAGAAACTAACTAGGATTCCCCTAGTAACGGCGAGTGAAGCGGGAAGAGCCCTGCACT 614868 Query 63 GAATCCC 69 ||||||| Sbjct 614867 GAATCCC 614861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230399226720