Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq294 282 7e-74 seq143 282 7e-74 >seq294 Length=160532 Score = 282 bits (312), Expect = 7e-74 Identities = 217/250 (87%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 45123 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 45064 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CA 129 | |||| || | ||||| | |||| | |||||||||||||| |||| || || Sbjct 45063 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTG--CACCGACAGCA 45008 Query 130 TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 ||| ||| || |||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 45007 TAGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 44949 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 44948 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTC 44889 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 44888 TCAATCTGTC 44879 Score = 255 bits (282), Expect = 9e-66 Identities = 212/249 (85%), Gaps = 10/249 (4%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 27284 TCCTTCAGTGTAGCGCGCGTGCGGCCC-GAACATCTAAGGGCATCACAGACCTGTTATTG 27226 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGC-CAGCCACCAACCAT 130 | ||| || ||||| | |||| | |||||||||||| || | || | ||| Sbjct 27225 C-TCATC--TCGTGTGGCTAAACGCCACTTGTCCCTCTAAGAGTTGCACCGAC--AGCAT 27171 Query 131 AG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || ||| || |||||||| |||||| ||||||||||||||||||||||||||||||| Sbjct 27170 AGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 27112 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||| ||||||||| |||||||||||||||| | Sbjct 27111 ATCGCTCCACCAACTAAGAACGGCCATGCA-CACCACCCACCGAATCAAGAAAGAGCTCT 27053 Query 250 CAATCTGTC 258 ||||||||| Sbjct 27052 CAATCTGTC 27044 Score = 187 bits (206), Expect = 4e-45 Identities = 204/251 (81%), Gaps = 20/251 (8%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||| |||||||| || || ||| | |||||| ||||||||||||||| Sbjct 9409 TCCTTCAGTGTAGCG-GCGTGCGGGCCCGA-CATAT--GGGCAT-ACAGACCTGTTATTG 9355 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CA 129 | ||| || ||||| | |||| | ||||||||| |||| |||| || || Sbjct 9354 C-TCATC--TCGTGTGGCTA-ACGCCACTTGTCCCTCTA-GAAGTTG--CACCGACAGCA 9302 Query 130 TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA-CCAGAC 187 ||| ||| || |||||||| |||||| ||||||||||||||||||||||| |||||| Sbjct 9301 TAGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCCAGAC 9243 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| ||||| |||||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 9242 -AATCGCTCCA-CAACTAAGAACGGCCATGCACCACCA-CCACCGAATCAAGAAAGAGCT 9186 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 9185 CTCAATCTGTC 9175 >seq143 Length=4187197 Score = 282 bits (312), Expect = 7e-74 Identities = 217/250 (87%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4153110 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 4153051 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CA 129 | |||| || | ||||| | |||| | |||||||||||||| |||| || || Sbjct 4153050 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTG--CACCGACAGCA 4152995 Query 130 TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 ||| ||| || |||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 4152994 TAGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 4152936 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 4152935 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTC 4152876 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 4152875 TCAATCTGTC 4152866 Score = 282 bits (312), Expect = 7e-74 Identities = 217/250 (87%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4171372 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 4171313 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CA 129 | |||| || | ||||| | |||| | |||||||||||||| |||| || || Sbjct 4171312 C-TCAATCT-CGTGTGGCTAAACGCCACTTGTCCCTCTAAGAAGTTG--CACCGACAGCA 4171257 Query 130 TAG-TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 ||| ||| || |||||||| |||||| |||||||||||||||||||||||||||||| Sbjct 4171256 TAGATCGGTGAA-CTATTTAGTAGGTTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 4171198 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 4171197 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTC 4171138 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 4171137 TCAATCTGTC 4171128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796797236598