Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq294 374 1e-101 seq143 374 1e-101 >seq294 Length=160532 Score = 374 bits (414), Expect = 1e-101 Identities = 261/296 (88%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG---TCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||| ||| |||| | ||||||||||||||||||||||||||| Sbjct 49922 TACTGAGCAGGATTACCGTTGCAACGACTGCAGTCATCAGTAGGGTAAAACTAACCTGTC 49863 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 49862 TCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTTGG 49803 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 49802 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 49743 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 49742 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 49683 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | | |||||||||||||||| | |||||| ||| ||||||| Sbjct 49682 CTTAAAACTCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCACGGTCTGTATTC 49627 Score = 367 bits (406), Expect = 2e-99 Identities = 260/296 (88%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG---TCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||| ||| |||| | ||||||||||||||||||||||||||| Sbjct 14143 TACTGAGCAGGATTACCGTTGCAACGACTGCAGTCATCAGTAGGGTAAAACTAACCTGTC 14084 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 14083 TCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTTGG 14024 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 14023 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 13964 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| | Sbjct 13963 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT-GTAACTTTTCTGACACCTCTTG 13905 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | | |||||||||||||||| | |||||| ||| ||||||| Sbjct 13904 CTTAAAACTCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCACGGTCTGTATTC 13849 Score = 334 bits (370), Expect = 1e-89 Identities = 256/296 (86%), Gaps = 8/296 (3%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG---TCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||| ||| |||| | ||||||||||||||||||||||||||| Sbjct 32008 TACTGAGCAGGATTACCGTTGCAACGACTGCAGTCATCAGTAGGGTAAAACTAACCTGTC 31949 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 31948 TCACGA-GGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTT-G 31891 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 31890 GTAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACG-CGC 31832 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 ||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||| | Sbjct 31831 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT-GTAAC-TTTCTGACACCTCTTG 31774 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | | |||||||||||||||| | |||||| ||| ||||||| Sbjct 31773 CTTAAAACTCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCACGGTCTGTATTC 31718 >seq143 Length=4187197 Score = 374 bits (414), Expect = 1e-101 Identities = 261/296 (88%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG---TCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||| ||| |||| | ||||||||||||||||||||||||||| Sbjct 4140809 TACTGAGCAGGATTACCGTTGCAACGACTGCAGTCATCAGTAGGGTAAAACTAACCTGTC 4140868 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4140869 TCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTTGG 4140928 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4140929 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 4140988 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 4140989 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 4141048 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | | |||||||||||||||| | |||||| ||| ||||||| Sbjct 4141049 CTTAAAACTCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCACGGTCTGTATTC 4141104 Score = 374 bits (414), Expect = 1e-101 Identities = 261/296 (88%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG---TCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||| ||| |||| | ||||||||||||||||||||||||||| Sbjct 4142836 TACTGAGCAGGATTACCGTTGCAACGACTGCAGTCATCAGTAGGGTAAAACTAACCTGTC 4142777 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4142776 TCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTTGG 4142717 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4142716 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 4142657 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 4142656 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 4142597 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | | |||||||||||||||| | |||||| ||| ||||||| Sbjct 4142596 CTTAAAACTCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCACGGTCTGTATTC 4142541 Score = 374 bits (414), Expect = 1e-101 Identities = 261/296 (88%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG---TCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||| ||| |||| | ||||||||||||||||||||||||||| Sbjct 4157909 TACTGAGCAGGATTACCGTTGCAACGACTGCAGTCATCAGTAGGGTAAAACTAACCTGTC 4157850 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4157849 TCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTTGG 4157790 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4157789 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 4157730 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 4157729 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 4157670 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | | |||||||||||||||| | |||||| ||| ||||||| Sbjct 4157669 CTTAAAACTCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCACGGTCTGTATTC 4157614 Score = 374 bits (414), Expect = 1e-101 Identities = 261/296 (88%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG---TCATCAGTAGGGTAAAACTAACCTGTC 57 |||| ||| | |||||| ||| |||| | ||||||||||||||||||||||||||| Sbjct 4176172 TACTGAGCAGGATTACCGTTGCAACGACTGCAGTCATCAGTAGGGTAAAACTAACCTGTC 4176113 Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 4176112 TCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAAGCCAACGCTTGG 4176053 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 177 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 4176052 TGAATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGC 4175993 Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | Sbjct 4175992 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTTG 4175933 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | ||| | | | | |||||||||||||||| | |||||| ||| ||||||| Sbjct 4175932 CTTAAAACTCCTAAAATCAAAAGGATCGATAGGCCCCGCTTTCACGGTCTGTATTC 4175877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854396941248