Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq294 82.4 1e-13 seq143 82.4 1e-13 >seq294 Length=160532 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 49487 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 49546 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 49547 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 49601 >seq143 Length=4187197 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 4141244 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 4141185 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 4141184 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 4141130 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 4142401 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 4142460 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 4142461 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 4142515 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 4157474 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 4157533 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 4157534 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 4157588 Score = 82.4 bits (90), Expect = 1e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGT-CGCCTCCCAAAGAGTAACGGAGGCG 171 ||||||||||| |||| ||||||||||||||||| | || |||| |||||| ||| | Sbjct 4175737 GACAGTGTCAGGCGGGGAGTTTGACTGGGGCGGTACATCTGTCAAACGGTAACGCAGGTG 4175796 Query 172 CCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAG 226 || ||| | |||||| ||| ||||||| ||| | ||| || |||||||| Sbjct 4175797 TCCTAAGGTGAGCTCAGCGAGGACGGAAACCTCGCGTAGAGTAAAAGGGCAAAAG 4175851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982396483008