Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq294 86.0 4e-15 seq143 86.0 4e-15 >seq294 Length=160532 Score = 86.0 bits (94), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 45317 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 45260 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 45259 TAAT-CAACGC 45250 Score = 75.2 bits (82), Expect = 7e-12 Identities = 63/71 (89%), Gaps = 5/71 (7%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||| |||||||||| Sbjct 27472 CTCACTAA-CCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAA-GGCAGGGACG 27417 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 27416 TAAT-CAACGC 27407 >seq143 Length=4187197 Score = 86.0 bits (94), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 4153304 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 4153247 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 4153246 TAAT-CAACGC 4153237 Score = 86.0 bits (94), Expect = 4e-15 Identities = 64/71 (90%), Gaps = 3/71 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| |||||||||||||||||||| Sbjct 4171566 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACG 4171509 Query 109 TAATACAACGC 119 |||| |||||| Sbjct 4171508 TAAT-CAACGC 4171499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300798990440