Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq294 91.5 2e-16 seq143 91.5 2e-16 seq321 89.7 6e-16 >seq294 Length=160532 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | | | |||| Sbjct 44485 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTGCAGGCG 44427 Query 70 TAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | |||||||||||||||||||||||| |||| |||||||| Sbjct 44426 AATCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 44385 Score = 82.4 bits (90), Expect = 9e-14 Identities = 85/105 (81%), Gaps = 6/105 (6%) Strand=Plus/Minus Query 9 GAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCT--AATGTATTCGG 66 |||||||||||| ||| || | ||||||||| |||||||||||| | ||| | | Sbjct 26659 GAAACCAACAAA-TAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTGG-CAG 26603 Query 67 GCGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 ||| | |||||||||||||||||||||||| |||| |||||||| Sbjct 26602 GCGAATCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 26558 >seq143 Length=4187197 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | | | |||| Sbjct 4152472 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTGCAGGCG 4152414 Query 70 TAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | |||||||||||||||||||||||| |||| |||||||| Sbjct 4152413 AATCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 4152372 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/102 (81%), Gaps = 2/102 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 ||||||||||||||| || | ||||||||| |||||||||||| | | | |||| Sbjct 4170734 AAACCAACAAAATAGAACCG-AGGTCCTATTCCATTATTCCATGCACCATTGTGCAGGCG 4170676 Query 70 TAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | |||||||||||||||||||||||| |||| |||||||| Sbjct 4170675 AATCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 4170634 >seq321 Length=722770 Score = 89.7 bits (98), Expect = 6e-16 Identities = 85/104 (82%), Gaps = 6/104 (6%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGC--TAATGTATTCGGG 67 ||||||||||||||| || | |||||| || |||||||||||| || |||| | || Sbjct 234771 AAACCAACAAAATAGAACCG-AGGTCCTACTCCATTATTCCATGCAGTATTGTA--CAGG 234827 Query 68 CGTAA-GCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGT 110 | | |||||||||||||||||||||||| |||| |||||||| Sbjct 234828 TGAATCGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAAAGT 234871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595197935772