Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq321 114 1e-23 seq294 114 1e-23 seq143 114 1e-23 >seq321 Length=722770 Score = 114 bits (126), Expect = 1e-23 Identities = 137/180 (76%), Gaps = 6/180 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTAC--C 67 |||||||||||||||||||||||| ||||||||||||| || | | |||| ||| | Sbjct 234871 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATT-CACCTGTACAATACTGC 234813 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAA 126 |||||||||| || |||||| | |||||||||||||| ||||| | ||| | | |||| Sbjct 234812 ATGGAATAATGGAGTAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTAA 234755 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| | | | | | |||||| | |||| || | ||||||||||||||||| Sbjct 234754 TGATTAGGAGGTACTGACGGGGGCATTTGTATGGCGGGGTTAGAGGTGAAATTCTTGGAT 234695 >seq294 Length=160532 Score = 114 bits (126), Expect = 1e-23 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68 |||||||||||||||||||||||| ||||||||||||| || || | | | || Sbjct 44385 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATTCGCCTGCACAATGGTGCA 44444 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 44445 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTAAT 44502 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | |||||| | |||| || | ||||||||||||||||| Sbjct 44503 GATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGAT 44561 Score = 102 bits (112), Expect = 8e-20 Identities = 135/180 (75%), Gaps = 8/180 (4%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATT--ACC 67 |||||||||||||||||||||||| ||||||||||||| || | ||| | | Sbjct 26558 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATTCGCCTGCCACAATGGTGC 26617 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAA 126 |||||||||| ||||||||| | |||||||| ||||| |||||| ||| | | |||| Sbjct 26618 ATGGAATAATGGAATAGGACCT-CGGTTCTA-TTTGTTGGTTTC--GGAACACGAGGTAA 26673 Query 127 TGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 |||| || | ||| | ||||| || |||| || | ||||||||||||||||| Sbjct 26674 TGATTAAGAGGGACTGACGGGGCATTC-GTATGGCGGGGTTAGAGGTGAAATTCTTGGAT 26732 >seq143 Length=4187197 Score = 114 bits (126), Expect = 1e-23 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68 |||||||||||||||||||||||| ||||||||||||| || || | | | || Sbjct 4152372 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATTCGCCTGCACAATGGTGCA 4152431 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 4152432 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTAAT 4152489 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | |||||| | |||| || | ||||||||||||||||| Sbjct 4152490 GATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGAT 4152548 Score = 114 bits (126), Expect = 1e-23 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCA 68 |||||||||||||||||||||||| ||||||||||||| || || | | | || Sbjct 4170634 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGATTCGCCTGCACAATGGTGCA 4170693 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 4170694 TGGAATAATGGAATAGGACCT-CGGTTCTATTTTGTTGGTTT-TCGGAACACGAGGTAAT 4170751 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | |||||| | |||| || | ||||||||||||||||| Sbjct 4170752 GATTAAGAGGGACTGACGGGGGCATTCGTATGGCGGGGTTAGAGGTGAAATTCTTGGAT 4170810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511998224320