Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq294 190 4e-46 seq143 190 4e-46 >seq294 Length=160532 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 45022 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 45079 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 45080 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTATCTGT 45139 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 45140 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 45199 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| | | | | |||||||||| || |||||||||| |||| || |||||||||| Sbjct 45200 TAATTA-TCCCCATGAACGAGGAATTCCCAGTAAGCGCGAATCATAAGTTCGCGTTGATT 45258 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 45259 ACGTCCCTGCCCTTTGTA 45276 Score = 156 bits (172), Expect = 8e-36 Identities = 169/215 (79%), Gaps = 7/215 (3%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | Sbjct 27225 GCAATAACAGGTCTGTGATGCCCTTAGATGTTC-GGGCCGCACGCGCGCTACACTGAAGG 27283 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | |||| || | | ||| | ||| |||| |||||| | | || ||| ||||| Sbjct 27284 AATCAAC-AGGTATTGTCCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTG 27342 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 || ||||| | | || ||||| | | | | ||| |||||| || |||||||||| || Sbjct 27343 CTAGGGATTG-GGTGTGTAATTA-TCCCCATGAAC-AGGAATTCC-AGTAAGCGCGAATC 27398 Query 294 ATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || ||||||||||||||||||| |||||||| Sbjct 27399 ATAAGTTCGCGTTGATTACGTCCCTG-CCTTTGTA 27432 Score = 122 bits (134), Expect = 2e-25 Identities = 164/217 (76%), Gaps = 10/217 (5%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAG 173 |||||||||||||||| |||||| | ||| || || |||||||| ||||||||||| | Sbjct 9354 GCAATAACAGGTCTGT-ATGCCC--ATATG-TCGGGCCCGCACGC-CGCTACACTGAAGG 9408 Query 174 AGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTG 233 | |||| || | || ||||| |||| |||||| | ||| |||||| ||||| Sbjct 9409 AATCAACAGGTATCTGTCC-TGGCCCAAAGGGTCGGGTAA-CCCGTTGAACTCT-TCGTG 9465 Query 234 CTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGT-AAGCGCGTGT 292 || ||||| | | || |||||| | | |||||||||| || ||| ||||||| | Sbjct 9466 CTAGGGATTGGGGTGTGTAATTATGCCCATGGAACGAGGAATTCCCAGTAAAGCGCGAAT 9525 Query 293 CATCAGCACGCGTTGATTAC-GTCCCTGCCCTTTGTA 328 ||| || ||||||||| || |||||||||||||||| Sbjct 9526 CATAAGTTCGCGTTGATGACGGTCCCTGCCCTTTGTA 9562 >seq143 Length=4187197 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 4153009 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 4153066 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 4153067 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTATCTGT 4153126 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 4153127 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 4153186 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| | | | | |||||||||| || |||||||||| |||| || |||||||||| Sbjct 4153187 TAATTA-TCCCCATGAACGAGGAATTCCCAGTAAGCGCGAATCATAAGTTCGCGTTGATT 4153245 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 4153246 ACGTCCCTGCCCTTTGTA 4153263 Score = 190 bits (210), Expect = 4e-46 Identities = 200/258 (78%), Gaps = 4/258 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 4171271 CTTCTTAGAGGGACAAGTGGCGTTTAGCCACACGA-GATTGAG-CAATAACAGGTCTGTG 4171328 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| ||||||||||||||||||||||| || |||| || | Sbjct 4171329 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGAAGGAATCAACAGGTATCTGT 4171388 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | ||| |||| |||||| | | || ||| ||||||| ||||| | | || Sbjct 4171389 CCTGGCCCGAAAGGGTCGGGTAACCCGTTGAACCTCCTTCGTGCTAGGGATTGGGGTGTG 4171448 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| | | | | |||||||||| || |||||||||| |||| || |||||||||| Sbjct 4171449 TAATTA-TCCCCATGAACGAGGAATTCCCAGTAAGCGCGAATCATAAGTTCGCGTTGATT 4171507 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 4171508 ACGTCCCTGCCCTTTGTA 4171525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947196609024