Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq294 482 7e-134 seq143 482 7e-134 seq321 378 2e-102 seq210 77.0 1e-11 >seq294 Length=160532 Score = 482 bits (534), Expect = 7e-134 Identities = 420/514 (82%), Gaps = 11/514 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | || ||| || |||| ||||| | ||||||||| Sbjct 44157 GTACTCATTCCAATTACGGGGCCTCGAAGGAGTCCCGTATTGTTATTTTTCGTCACTACC 44098 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 44097 TCCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 44038 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 44037 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 43978 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||| ||||||||||||||| ||||||| || | ||||||| Sbjct 43977 AGGCATAGCACGTACCATCGACAGTTGATAGGGCAGACATTTGAAAGACACGTCGCCGGG 43918 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA---GGA-GCCCCGAAGGG 293 |||| || |||||| | | ||||||| || ||||||| ||| | || | Sbjct 43917 ACAAGCCCGTGCGATCTGCTCAAAGTTATCCAGAGTCACCAAAACGGACGGCCTTGCGAC 43858 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTA 350 || | | |||| |||||||||| | | | | || || ||||| | || | ||||||| Sbjct 43857 CGATTGGTTTTGATCTAATAAAAGCGCTCTTCCCGTGAGGTCGGAGCTTCGTTGCATGTA 43798 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT 410 ||||||||||||||||||| |||||||| |||| | |||| ||| ||| ||| |||||| Sbjct 43797 TTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACCATAACT 43738 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470 ||||||||||||||||||| |||||||||| | | | | |||||||||||||||||| Sbjct 43737 GATTTAATGAGCCATTCGCGGTTTCACTGTGCA-AGAGTATGTACTTAGACATGCATGGC 43679 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| Sbjct 43678 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 43645 Score = 432 bits (478), Expect = 1e-118 Identities = 413/513 (81%), Gaps = 17/513 (3%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | || ||| || |||| ||||| | ||||||||| Sbjct 26332 GTACTCATTCCAATTACGGGGCCTCGAAGGAGTCCCGTATTGTTATTT-TCGTCACTACC 26274 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 26273 TCCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 26214 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| ||| |||||||||||||||||||| | ||||||||||||||| |||||||| Sbjct 26213 TTCTCATGCT-CCTCTCCGGAATCGAACCCTGA-TCCCCGTTACCCGTTACAACCATGGT 26156 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||| ||||||||||||||| ||||||| || | ||||||| Sbjct 26155 AGGCATAGCACGTACCATCGACAGTTGATAGGGCAGACATTTGAAAGACACGTCGCCGGG 26096 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA---GGA-GCCCCGAAGGG 293 |||| || |||||| | | ||||||| || ||||||| ||| | || | Sbjct 26095 ACAAGCCCGTGCGATCTGCTCAAAGTTATCCAGAGTCACCAAAACGGACGGCCTTGCGAC 26036 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGGGGTTTTTAGCATGTAT 351 || | | |||| |||| ||||| | | | | || || |||| | || | |||||||| Sbjct 26035 CGATTGGTTTTGATCT-ATAAAAGCGCTCTTCCCGTGAGGTCGAGCTTCGTTGCATGTAT 25977 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTG 411 ||||||||||| |||||| |||||||| |||| | |||| ||| ||| ||| || |||| Sbjct 25976 TAGCTCTAGAA-TACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACCAT-ACTG 25919 Query 412 ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCT 471 |||||||||||||||||| |||||||||| | | | | ||||||||||||||||||| Sbjct 25918 ATTTAATGAGCCATTCGCGGTTTCACTGTGCA-AGAGTATGTACTTAGACATGCATGGCT 25860 Query 472 TAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||| ||||||||||||||||||||||||||| Sbjct 25859 TAATC-TTGAGACAAGCATATGACTACTGGCAG 25828 Score = 352 bits (390), Expect = 9e-95 Identities = 402/515 (78%), Gaps = 30/515 (6%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||| || | || | ||| || |||| ||||| | |||||||||| Sbjct 8486 GTACTCATTCCAAT-ACGGGGCCTCGAGGAGTCCCGTATTGTTATTTTTCGTCACTACCT 8428 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||||||| | ||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 8427 CCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTC-TTGGATGTGGTAGCCGTT 8369 Query 121 T-CTC-AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 | ||| | ||||| || |||||||| | ||| ||||||||||||||||| ||||||| Sbjct 8368 TTCTCCATGCTCCTTC--CGGAATCGGAACCTGATTCCCCGTTACCCGTTACAACCATGG 8311 Query 179 TAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||||| | ||||||||| ||||| ||||||||| ||||||| || | ||||||| Sbjct 8310 TAGGCATAGCACGTACCATCGACAGTTG-TAGGGCAGACATTTGAAAGACAC-TCGCCGG 8253 Query 239 CTCAAGGCCATGCGATTCGTT--AAGTTATTATG--AATCACCAAGGAGCCCCGAAGGGC 294 |||| || |||||| | | ||||||| | || || | ||| | || | | Sbjct 8252 GACAAG-CCGTGCGATCTGCTCAAAGTTATCCAGTCAACCAAAACGGA-CGCCTTGCGCC 8195 Query 295 GTTGGTTTTTTATCTAATAAATACACCCCTTCC---GAAGTCGGGGTTTTTAGCATGTAT 351 | || |||| ||||| |||| | | ||||| || ||||| || | |||||||| Sbjct 8194 GATG--TTTTGATCTA-TAAA--CCGCTCTTCCCGTGAGGTCGGACTTCGTTGCATGTAT 8140 Query 352 TAGCTCTAGAATTACCACGGTTATCCATGTAGTAAG-GTACT-ATCAAATAAACGATAAC 409 |||||||||||||||||| |||||||| |||| | |||| ||| | | ||| ||||| Sbjct 8139 TAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGTTGTACCCATCTA-TGAAC-ATAAC 8082 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||||||||||||||||||| |||||| ||| | | | ||||||||||||||||| Sbjct 8081 TGATTTAATGAGCCATTCGCGGTTTCA-TGTGCAA---GGTATTACTTAGACATGCATGG 8026 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||| |||| Sbjct 8025 CTTAATCTTTGAGACAAGCATATGACTACTCGCAG 7991 >seq143 Length=4187197 Score = 482 bits (534), Expect = 7e-134 Identities = 420/514 (82%), Gaps = 11/514 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | || ||| || |||| ||||| | ||||||||| Sbjct 4152144 GTACTCATTCCAATTACGGGGCCTCGAAGGAGTCCCGTATTGTTATTTTTCGTCACTACC 4152085 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4152084 TCCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 4152025 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 4152024 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 4151965 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||| ||||||||||||||| ||||||| || | ||||||| Sbjct 4151964 AGGCATAGCACGTACCATCGACAGTTGATAGGGCAGACATTTGAAAGACACGTCGCCGGG 4151905 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA---GGA-GCCCCGAAGGG 293 |||| || |||||| | | ||||||| || ||||||| ||| | || | Sbjct 4151904 ACAAGCCCGTGCGATCTGCTCAAAGTTATCCAGAGTCACCAAAACGGACGGCCTTGCGAC 4151845 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTA 350 || | | |||| |||||||||| | | | | || || ||||| | || | ||||||| Sbjct 4151844 CGATTGGTTTTGATCTAATAAAAGCGCTCTTCCCGTGAGGTCGGAGCTTCGTTGCATGTA 4151785 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT 410 ||||||||||||||||||| |||||||| |||| | |||| ||| ||| ||| |||||| Sbjct 4151784 TTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACCATAACT 4151725 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470 ||||||||||||||||||| |||||||||| | | | | |||||||||||||||||| Sbjct 4151724 GATTTAATGAGCCATTCGCGGTTTCACTGTGCA-AGAGTATGTACTTAGACATGCATGGC 4151666 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| Sbjct 4151665 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 4151632 Score = 482 bits (534), Expect = 7e-134 Identities = 420/514 (82%), Gaps = 11/514 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | || ||| || |||| ||||| | ||||||||| Sbjct 4170406 GTACTCATTCCAATTACGGGGCCTCGAAGGAGTCCCGTATTGTTATTTTTCGTCACTACC 4170347 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4170346 TCCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 4170287 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 4170286 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTACAACCATGGT 4170227 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||| ||||||||||||||| ||||||| || | ||||||| Sbjct 4170226 AGGCATAGCACGTACCATCGACAGTTGATAGGGCAGACATTTGAAAGACACGTCGCCGGG 4170167 Query 240 TCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA---GGA-GCCCCGAAGGG 293 |||| || |||||| | | ||||||| || ||||||| ||| | || | Sbjct 4170166 ACAAGCCCGTGCGATCTGCTCAAAGTTATCCAGAGTCACCAAAACGGACGGCCTTGCGAC 4170107 Query 294 CGTTGGTTTTTTATCTAATAAATACACCCCTTCC--GAAGTCGG-GGTTTTTAGCATGTA 350 || | | |||| |||||||||| | | | | || || ||||| | || | ||||||| Sbjct 4170106 CGATTGGTTTTGATCTAATAAAAGCGCTCTTCCCGTGAGGTCGGAGCTTCGTTGCATGTA 4170047 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACT 410 ||||||||||||||||||| |||||||| |||| | |||| ||| ||| ||| |||||| Sbjct 4170046 TTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACCATAACT 4169987 Query 411 GATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGC 470 ||||||||||||||||||| |||||||||| | | | | |||||||||||||||||| Sbjct 4169986 GATTTAATGAGCCATTCGCGGTTTCACTGTGCA-AGAGTATGTACTTAGACATGCATGGC 4169928 Query 471 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||| Sbjct 4169927 TTAATCTTTGAGACAAGCATATGACTACTGGCAG 4169894 >seq321 Length=722770 Score = 378 bits (418), Expect = 2e-102 Identities = 361/452 (80%), Gaps = 14/452 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||||||||||| | || | || ||| || |||| ||||| | ||||||||| Sbjct 235095 GTACTCATTCCAATTACGGGGCCTCGAAGGAGTCCCGTATTGTTATTTTTCGTCACTACC 235154 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| | ||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 235155 TCCCCGTGCCAGGAGTGGGTAATTTGCGCGCCTACTGCCTTCCTTGGATGTGGTAGCCGT 235214 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||||| |||||||||||||||||||||||| |||| | |||||||||| |||||||| Sbjct 235215 TTCTCATGCTCCCTCTCCGGAATCGAACCCTGATTCTCTGTTACCCGTTATAACCATGGT 235274 Query 180 AGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 |||| || | | ||||||||| ||||||||||||||| ||||||| || | ||||||| Sbjct 235275 AGGCACAGCA-CGTACCATCGACAGTTGATAGGGCAGACATTTGAAAGACACGTCGCCGG 235333 Query 239 CTCAAGGCCATGCGATTCGTT--AAGTTATTATGAATCACCAA---GGA-GCCCCGAAGG 292 |||| || |||||| | | ||||||| | ||||||| ||| | | | Sbjct 235334 GACAAGTCCGTGCGATCTGCTCAAAGTTATCCGAAGTCACCAATACGGACGGCTTTGCGA 235393 Query 293 GCGTTGGTTTTTTATCTAATAAATACACCCCTTCC---GAAGTCGG-GGTTTTTAGCATG 348 || | | |||| |||| ||||| | | ||||| || ||||| | || | ||||| Sbjct 235394 CCGATTGGTTTTGATCTGATAAA-AGTGCTCTTCCCGTGAGGTCGGAGCTTCGTTGCATG 235452 Query 349 TATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAA 408 ||||||||||||||||||||| |||||||| |||| | |||| ||| ||| ||| |||| Sbjct 235453 TATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGATTGTACCATCTAATGAACCATAA 235512 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 ||||||||||||||||||||| ||||||| || Sbjct 235513 CTGATTTAATGAGCCATTCGCGGTTTCACGGT 235544 >seq210 Length=945790 Score = 77.0 bits (84), Expect = 1e-11 Identities = 80/105 (76%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 151 AATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAG 210 |||||||||||||||||| ||||| ||||| | | ||||||||| ||||||||| Sbjct 651630 AATTCCCCGTTACCCGTTACAACCATTATAGGCACAGAACGTACCATCGACAGTTGATAG 651689 Query 211 GGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATT 255 || ||| ||||||| || | || |||| | | || ||||||| Sbjct 651690 GGTAGACATTTGAAAGACACGTCACCGGGACGGGCCCGTGCGATT 651734 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510394592768