Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Crassostrea_20virginica_20[genbank_20GCA_5F002022765.1_202017-03-08] 358 sequences; 685,793,667 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq76 100 2e-16 seq46 100 2e-16 seq40 100 2e-16 seq71 95.1 1e-14 >seq76 Length=1543109 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| ||||| ||||| ||||| || || || ||||| |||| ||||| || || Sbjct 1519505 TACTCCACAATCTCGGTACACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGTTG 1519564 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||| || || ||||||||||| |||||||||||| |||||||| || ||| Sbjct 1519565 GACTTGCGGTTACAGTGATCCTTGTACAGCATGTACGGAGTCCCGGTCTCGGTCTGCGAC 1519624 Query 66173 TCAATGATGGCGTGCCAAAG 66192 || |||| ||||| ||| || Sbjct 1519625 TCGATGACGGCGTACCACAG 1519644 Score = 100 bits (110), Expect = 2e-16 Identities = 134/184 (73%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| |||| ||| || ||||| | ||| || ||| || || || || ||| || Sbjct 1519852 TGGGCACTCGTGAGGGTCCATCAAAGTCCACTCCTCATTCTTCTCCACGCGCTTCATGAA 1519911 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GT 66404 || ||||| ||||| || |||||||| | |||||| |||| || ||||| | || || Sbjct 1519912 GAGGTCAGGAATCCACAGAGCGTAGAACAAATCGCGGGCTCTCTGTTCCTCCTTCCCTGT 1519971 Query 66405 GATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | | || ||| ||| ||||||| || ||||| ||||||||||| |||| ||| |||| Sbjct 1519972 GTTCTTCTTGCA-GTCCAGGAACTGGAAAATGTCTGCATGCCATGGCTCCAAGTAAATGG 1520030 Query 66465 CGAA 66468 |||| Sbjct 1520031 CGAA 1520034 Score = 89.7 bits (98), Expect = 4e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 65707 TTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCGATTAAGTTC 65766 || ||| |||| ||| | || || | |||||||||||||| || || || || Sbjct 1518553 TTCACAACTGGCCTCTAACGCTGCGTAGTAAATGGTCTCGAAGATCTGTTTGTTTAGAAG 1518612 Query 65767 ACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGCCAGACCTTG 65826 | || || ||||||||| | || | | |||||| | ||| | ||||||||| || || Sbjct 1518613 CTGGGCTTCCTCGCTCTCGAAGGGGAATCTCATCAGAATAAAGGCGTCGGCCAGTCCCTG 1518672 Query 65827 AACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCCT 65873 ||||||||||||||| || ||||| | || ||||| || | |||| Sbjct 1518673 AACTCCAATACCGATAGGGCGATGTCTCATGTTGGACCGCTTGGCCT 1518719 >seq46 Length=1907351 Score = 100 bits (110), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || |||||||| || || ||| ||| || || |||||| |||| ||| Sbjct 1804367 TTCAATGCAATTGAGACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCATCAAGTGG 1804308 Query 61459 ATC----ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||| ||||| | | ||| ||| || | || |||| ||||| | || || Sbjct 1804307 ATCGGGGACCAGGAAGCTGACTA----TGGGGAGAGGGTGGTGGCCTTTGCTGCTGTGGA 1804252 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || |||||||| ||||| || ||||| ||||||||||| || ||| | || Sbjct 1804251 GGGCATCTTCTTCAGTGGGAGCTTTGCTGCCATCTTCTGGTTGAAGAAGCGGGGAATCAT 1804192 Query 61575 GCCCGGTCTGACCTTCAGCAATGA 61598 ||| || || |||||||| ||||| Sbjct 1804191 GCCAGGACTTACCTTCAGTAATGA 1804168 >seq40 Length=2822076 Score = 100 bits (110), Expect = 2e-16 Identities = 145/204 (71%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 61399 TTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGG 61458 |||||||| || |||||||| || || ||| ||| || || |||||| |||| ||| Sbjct 2222645 TTCAATGCAATTGAGACGATGCCTTGTGTCAAGAAGAAGGCAGACTGGGCCATCAAGTGG 2222586 Query 61459 ATC----ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGA 61514 ||| ||||| | | ||| ||| || | || |||| ||||| | || || Sbjct 2222585 ATCGGGGACCAGGAAGCTGACTA----TGGGGAGAGGGTGGTGGCCTTTGCTGCTGTGGA 2222530 Query 61515 GGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTAT 61574 ||| | || |||||||| ||||| || ||||| ||||||||||| || ||| | || Sbjct 2222529 GGGCATCTTCTTCAGTGGGAGCTTTGCTGCCATCTTCTGGTTGAAGAAGCGGGGAATCAT 2222470 Query 61575 GCCCGGTCTGACCTTCAGCAATGA 61598 ||| || || |||||||| ||||| Sbjct 2222469 GCCAGGACTTACCTTCAGTAATGA 2222446 >seq71 Length=3982359 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 ||||| || || ||||| ||||| || || || ||||| |||| ||||| || || Sbjct 1381665 TACTCCACGATCTCGGTACACAGGTTGCTACATTTGATGGTCCCCAGGTTCTGCTGGTTT 1381606 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 |||||| || || ||||||||||| |||||||||||| |||||||| || ||| Sbjct 1381605 GACTTGCGGTTACAGTGATCCTTGTACAGCATGTACGGAGTCCCGGTCTCGGTCTGCGAC 1381546 Query 66173 TCAATGATGGCGTGCCAAAG 66192 || |||| ||||| ||| || Sbjct 1381545 TCGATGACGGCGTACCACAG 1381526 Score = 91.5 bits (100), Expect = 1e-13 Identities = 132/184 (72%), Gaps = 2/184 (1%) Strand=Plus/Minus Query 66286 TGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAA 66345 ||| |||| ||| || ||||| | ||| || | | || || || || ||| || Sbjct 1381311 TGGGCACTCGTGAGGGTCCATCAAAGTCCACTCCTCGTTCTTCTCCACGCGCTTCATGAA 1381252 Query 66346 TAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GT 66404 || ||||| ||||| || |||||||| | |||||| || | || ||||| | || || Sbjct 1381251 GAGGTCAGGAATCCACAGAGCGTAGAACAAATCGCGGGCCCTCTGTTCCTCCTTCCCTGT 1381192 Query 66405 GATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | | || ||| ||| ||||||| || ||||| ||||||||||| |||||||| |||| Sbjct 1381191 GTTCTTCTTGCA-GTCCAGGAACTGGAAAATGTCTGCATGCCATGGCTCCAGGTAAATGG 1381133 Query 66465 CGAA 66468 | || Sbjct 1381132 CAAA 1381129 Score = 87.8 bits (96), Expect = 1e-12 Identities = 111/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 65698 CTTGGCAAGTTGACAGCTGGTCTCGAGTGCGGCAAAATAAATGGTCTCGAAAATGCGTCG 65757 || ||| | || ||| |||| ||| | ||| || | ||||||||||| || || || Sbjct 1382576 CTCGGCCAATTCACAACTGGCCTCTAATGCCGCGTAGTAAATGGTCTCAAAGATCTGTTT 1382517 Query 65758 ATTAAGTTCACGTGCCTCATCGCTCTCGTACGGCATACCCATCAGGACAAAAGTGTCGGC 65817 || || | || || ||||||||| | || | | |||||| | ||| | |||||| Sbjct 1382516 GTTTAGAAGCTGAGCTTCCTCGCTCTCGAAGGGGAATCTCATCAGAATAAAGGCGTCGGC 1382457 Query 65818 CAGACCTTGAACTCCAATACCGATGGGACGATG 65850 ||| || ||||||||||||||||| || ||||| Sbjct 1382456 CAGTCCCTGAACTCCAATACCGATAGGGCGATG 1382424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566265361120