Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq113065 230 3e-58 seq605934 217 2e-54 seq424217 120 5e-25 seq36254 78.8 1e-12 >seq113065 Length=6675 Score = 230 bits (254), Expect = 3e-58 Identities = 196/235 (83%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 2368 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 2425 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| ||| || ||||||||| |||||||||||||| | | |||| | ||| Sbjct 2426 CTCGTTCAAGGGAAATAATTGCAATTCCCTATCCCCATCACGGAGGAGGTTCAGCGGATT 2485 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| ||||||||| | | || || ||| | | ||||||||||||||||| Sbjct 2486 ACCCAGACCTTCCGGCCAAGGGCAGTGTACCCGCTGATTCCGCCAGTGTAGCGCGCGTGC 2545 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||| |||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 2546 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCGTGGC 2599 >seq605934 Length=36846 Score = 217 bits (240), Expect = 2e-54 Identities = 194/235 (83%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 6016 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 6073 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| ||| || ||||||||| |||||||||||||| | | |||| | ||| Sbjct 6074 CTCGTTCAAGGGAAATAATTGCAATTC-CTATCCCCATCACGGAGGAGGTTCAGCGGATT 6132 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| ||||||||| | | || || ||| | | ||||||||||||||||| Sbjct 6133 ACCCAGACCTTCCGGCCAAGGGCAGTGTACCCGCTGATTCCGCCAGTGTAGCGCGCGTGC 6192 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||| |||||| |||||||||||||||||||||||| ||||| || |||||| Sbjct 6193 GGCCCCGAACATTCAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCGTGGC 6246 Score = 215 bits (238), Expect = 8e-54 Identities = 191/232 (82%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| ||||| | Sbjct 24370 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATC-C 24313 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| ||| || ||||||||| |||||||||||||| | | |||| | ||| Sbjct 24312 CTCGTTCAAGGGAAATAATTGCAATTCCCTATCCCCATCACGGAGGAGGTTCAGCGGATT 24253 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| ||||| ||||||||| | | || ||| | | |||||||||||||||||| Sbjct 24252 ACCCAGACCTTCCGGCCAAGGGCAGTGTA-CGCTGATTCCGCCAGTGTAGCGCGCGTGCG 24194 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 |||| |||||||||||||||||||||||||||||||| ||||| || |||| Sbjct 24193 GCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCGTG 24143 >seq424217 Length=14372 Score = 120 bits (132), Expect = 5e-25 Identities = 125/160 (78%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 58 TTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA 117 ||||||||| ||| || ||||||||| |||||||||||||| | | |||| || Sbjct 11130 TTCCTCGTTCAAGGA-AATAATTGCAATTC-CTATCCCCATCACGGAGGAGGTTCAGCGA 11187 Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 |||||| ||||| |||| | || | || || ||| | | |||||||||||||||| Sbjct 11188 TTACCCAGACCTTCCGGCAAGGGCAGTGTACCCGCTGA-TCCGCCAGTGTAGCGCGCGTG 11246 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||| |||||||||||||||||| ||||||||||||| Sbjct 11247 CGGCCGCGAACATCTAAGGGCATCATCGACCTGTTATTGC 11286 >seq36254 Length=78239 Score = 78.8 bits (86), Expect = 1e-12 Identities = 134/182 (74%), Gaps = 12/182 (7%) Strand=Plus/Minus Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCAC-GATGAAATT-TCAAAG 116 |||||||| | | | || ||||||||| ||||||||||||| || | ||| ||| | Sbjct 8470 TCCTCGTTCA-GCCGAATAATTGCAATTC-CTATCCCCATCACGGAGGTTATTGTCAGCG 8413 Query 117 ATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAG-TGTAGCGCGCG 175 ||||| | ||| ||||||||| || || ||| | | ||| |||||| || Sbjct 8412 -TTACCAGACCCTTCCGGCCAAGG---CAGGGCCGCTGATTCCGCCAGTTGTAGCAGCCG 8357 Query 176 TGCGGCC-CAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCC 234 ||||||| | ||||||||||||| |||||||| | ||||||| ||||| || ||| | | Sbjct 8356 TGCGGCCGCCGAACATCTAAGGG-ATCACAGAACCGTTATTG-CTCAATCTCGCGTTGGC 8299 Query 235 TA 236 || Sbjct 8298 TA 8297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 747358937765