Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq605934 201 2e-49 seq113065 196 9e-48 seq424217 156 8e-36 seq380862 127 4e-27 seq36254 96.9 6e-18 >seq605934 Length=36846 Score = 201 bits (222), Expect = 2e-49 Identities = 203/259 (78%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAAT 120 || ||| | || ||||||||||||||||| ||||||||||||||||||| || ||| Sbjct 6915 GGGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAAC 6856 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-C 179 | ||||||||||||| ||||||||| | |||||||||| |||||||| | || | Sbjct 6855 AGTAGAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTTTCGGAACTC 6797 Query 180 GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 | ||||||||||| ||||| | |||||| | ||||| ||| |||||||||||| Sbjct 6796 GAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTGCGGTGTGAGAGGTGAAATT 6737 Query 240 CTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 ||||||| ||||| | | ||||||||||| || ||||| ||||||||||||||| Sbjct 6736 CTTGGATCGCCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATC 6677 Query 300 AGTGAACGAAAGTTAGGGG 318 | ||||||||||||| || Sbjct 6676 A-AGAACGAAAGTTAGAGG 6659 Score = 192 bits (212), Expect = 1e-46 Identities = 202/259 (78%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAAT 120 || ||| | || |||||||||||||| || ||||||||||||||||||| || ||| Sbjct 17880 GGGGCCGGAACGTTTACTTTGAAAAA-TTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAAC 17822 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-C 179 | ||||||||||||| ||||||||| | |||||||||| |||||||| | || | Sbjct 17821 AGTAGAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTTTCGGAACTC 17763 Query 180 GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 | ||||||||||| ||||| | |||||| | ||||| ||| |||||||||||| Sbjct 17762 GAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTGCGGTGTGAGAGGTGAAATT 17703 Query 240 CTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 ||||||| ||||| | | ||||||||||| || ||||| ||||||||||||||| Sbjct 17702 CTTGGATCGCCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATC 17643 Query 300 AGTGAACGAAAGTTAGGGG 318 | ||||||||||||| || Sbjct 17642 A-AGAACGAAAGTTAGAGG 17625 Score = 178 bits (196), Expect = 2e-42 Identities = 200/259 (77%), Gaps = 8/259 (3%) Strand=Plus/Plus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAAT 120 || ||| | || ||||||||||||||||| ||||||||||||||||||| || ||| Sbjct 23475 GGGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAAC 23534 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-C 179 | ||||||||||||| ||||||||| | |||||||||| |||||||| | || | Sbjct 23535 AGTAGAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTTTCGGAACTC 23593 Query 180 GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATT 239 | || |||||| | ||||| | ||||| || ||||| ||| |||||||||||| Sbjct 23594 GAGGTTATGATT-AGAGGGACTGACGGGGCATTC-GTATTGCGGTGTGAGAGGTGAAATT 23651 Query 240 CTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATC 299 ||||||| ||||| | ||||||||||| || ||||| ||||||||||||||| Sbjct 23652 CTTGGATCGCCGCAAGAC--GCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATC 23709 Query 300 AGTGAACGAAAGTTAGGGG 318 | ||||||||||||| || Sbjct 23710 A-AGAACGAAAGTTAGAGG 23727 >seq113065 Length=6675 Score = 196 bits (216), Expect = 9e-48 Identities = 204/260 (78%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 62 GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAAT 120 || ||| | || ||||||||||||||||| ||||||||||||||||||| || ||| Sbjct 3273 GGGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAAC 3214 Query 121 ACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-C 179 | ||||||||||||| ||||||||| | |||||||||| |||||||| | | || | Sbjct 3213 AGTAGAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGAACTC 3156 Query 180 GCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAAT-TGTCAGAGGTGAAAT 238 | ||||||||||| ||||| | |||||| | ||||| ||| ||||||||||| Sbjct 3155 GAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGTATTGGCGGTGTGAGAGGTGAAAT 3096 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAAT 298 |||||||| ||||| | | ||||||||||| || ||||| |||||||||||||| Sbjct 3095 TCTTGGATCGCCGCAAGACGACCGACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT 3036 Query 299 CAGTGAACGAAAGTTAGGGG 318 || ||||||||||||| || Sbjct 3035 CA-AGAACGAAAGTTAGAGG 3017 >seq424217 Length=14372 Score = 156 bits (172), Expect = 8e-36 Identities = 232/313 (74%), Gaps = 17/313 (5%) Strand=Plus/Minus Query 13 CCGGGCCTTTCCTTCTGGGGATC---CGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAG 69 || |||||||||| || || || | | ||| ||| | || ||| || || ||| | Sbjct 12005 CCTGGCCTTTCCT-CTCGGTTTCTCGCCCGTGCTCTTAATTGAGTG--CCAGGAGGCCGG 11949 Query 70 GACTTTTACTTTGAAAAAATTA-GAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGC 128 || ||||||||||||||||| ||||||||||||||||| || ||| | ||| Sbjct 11948 AACGTTTACTTTGAAAAAATTGTGAGTGTTCAAAGCAGGCTCGCGCCTGAACAGTAGAGC 11889 Query 129 ATGGAATAATAGAATAG-GACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC-CGCCGTAA 186 |||||||||| |||||| ||| |||||||||| ||||||||| | || || |||| Sbjct 11888 ATGGAATAATGGAATAGCGAC--TCGGTTCTATTGCGTTGGTTTC-GGAACTCGAGGTAA 11832 Query 187 TGATTAATAGGGATAGTCGGG-GGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||||||| ||||| | |||| | || |||| ||| ||||||||||||| |||| Sbjct 11831 TGATTAAGAGGGACTGACGGGCGCATTCGATATTGCGGTGTGAGAGGTGAAATTC-TGGA 11773 Query 246 TTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 | ||||| || ||||||||||| || |||| |||||||||||||||| ||| Sbjct 11772 TCGCCGCAAGAC-GACGACTGCGAAAGCATT-TGCAAGAATGTTTTCATTAATCA-AGAA 11716 Query 306 CGAAAGTTAGGGG 318 |||||||||| || Sbjct 11715 CGAAAGTTAGAGG 11703 >seq380862 Length=27576 Score = 127 bits (140), Expect = 4e-27 Identities = 175/237 (74%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 62 GGAGCCAGGACTTTTACTTTGA-AAAAATTAGAGTGTTCAAAGCAGGCCTTT-GCTCGAA 119 || ||| | || ||| ||||| ||||||| || |||||||||||||||| || ||| Sbjct 16758 GGGGCCGGAACGTTTGTTTTGACAAAAATTGGAACGTTCAAAGCAGGCCTTCCGCCTGAA 16817 Query 120 TACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC- 178 | ||||||||||||| ||||||||| | |||||||||| |||||| | | || Sbjct 16818 CAGTGGAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTGTTTGTCACT 16876 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||||| | |||| || || || ||| ||||||||||| Sbjct 16877 CGATGTAATGATTAAGAGGGACTGAGGGGGCATTC-GTTTTGCGGTGTGAGAGGTGAAAT 16935 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG-ATGTTTTCAT 294 || ||||| | ||||| | | ||||||||||| || ||| || ||||| |||| Sbjct 16936 TCGTGGATCTCCGCAAGACGACCGACTGCGAAAGCATTTGCCACGGAATGTTATCAT 16992 Score = 89.7 bits (98), Expect = 9e-16 Identities = 164/237 (69%), Gaps = 20/237 (8%) Strand=Plus/Plus Query 62 GGAGCCAGGACTTTTACTTTGA-AAAAATTAGAGTGTTCAAAGCAGGCCTT-TGCTCGAA 119 || ||| | || ||| ||||| ||||||| || |||||||||||||||| || ||| Sbjct 15576 GGGGCCGGAACGTTTGTTTTGACAAAAATTGGAACGTTCAAAGCAGGCCTTCCGCCTGAA 15635 Query 120 TACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC- 178 | ||||||||||||| ||||||||| | |||||||||| |||||| | | || Sbjct 15636 CAGTGGAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTGTTTGTCACT 15694 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || | | ||| ||||| | || || || ||||||||||| Sbjct 15695 CGATGGACTGA---------------GGGGGCATTCGTTTTGCGGTGAGAGAGGTGAAAT 15739 Query 239 TCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGG-ATGTTTTCAT 294 || ||||| | ||||| | | ||||||||||| ||| ||| || |||||||||| Sbjct 15740 TCCTGGATCTCCGCAAGACGACCGACTGCGAAAGCATTCGCCACGGAATGTTTTCAT 15796 >seq36254 Length=78239 Score = 96.9 bits (106), Expect = 6e-18 Identities = 181/249 (73%), Gaps = 18/249 (7%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGC-ATGG 132 ||||||||||||| | |||||| |||||||||||| || | || | |||| || | Sbjct 7648 TTACTTTGAAAAATT--GAGTGT-CAAAGCAGGCCTCTGACCTGACCAGTATAGCGATCG 7704 Query 133 AATAA-TAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATT 191 ||||| | ||||||||| | |||||||| ||||||||| || ||||||||| Sbjct 7705 AATAACTGGAATAGGACCTC--GTTCTATTGCGTTGGTTTCGGAAACTCGAGTAATGATT 7762 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 || ||||| | |||| | | ||||| ||| ||||||||||||| ||||| Sbjct 7763 AAGAGGGACTGACGGGCGCATTCGTATTGCGGTGT-AGAGGTGAAATTC-TGGATCGGCC 7820 Query 252 G-AAGACTAAC-TACTGCGAAAGCGTTCAC-CAAGGAT-GTTTTCATT---AATCAGTGA 304 | ||||| | | ||||||||||| || | |||| || ||||||| | ||||| || Sbjct 7821 GCAAGACGACCGAACTGCGAAAGCATTTGCGCAAGAATAGTTTTCAATTAAAATCA-AGA 7879 Query 305 ACGAAAGTT 313 ||||||||| Sbjct 7880 ACGAAAGTT 7888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 909369526208