Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq113065 273 3e-71 seq605934 260 2e-67 seq424217 224 2e-56 seq602514 215 8e-54 seq36254 104 4e-20 >seq113065 Length=6675 Score = 273 bits (302), Expect = 3e-71 Identities = 220/261 (84%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||| || || |||| |||||||||||||||||||||| ||||||||||||||||||||| Sbjct 2513 TACCCGCTGATTCCGCCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAG 2572 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||| |||| || | | |||| || |||| | |||||||||||||| | Sbjct 2573 ACCTGTTATTGC-TCAATCTCGCGT-GGCTAGACGCCACTTGTCCCTCTAAGAAGTG-GA 2629 Query 121 CACCAACCATAGTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | | ||| | | ||| || ||||||||| | | ||||||||||||||||||| Sbjct 2630 CGCGCACCGCGGCGGGTGGCGCCACTATTTAGCAAGCCAGAGTCTCGTTCGTTATCGGAA 2689 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| Sbjct 2690 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCA 2749 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| |||||||||| Sbjct 2750 AGAAAGAGCTCTCAATCTGTC 2770 >seq605934 Length=36846 Score = 260 bits (288), Expect = 2e-67 Identities = 211/250 (84%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 24216 TCCGCCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 24157 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 | |||| || | | ||| || |||| | |||||||||||||| | | | ||| Sbjct 24156 C-TCAATCTCGCGT--GCTAGACGCCACTTGTCCCTCTAAGAAGTG-GACGCGCACCGCG 24101 Query 132 GTCGATGGGGC---TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | | ||| || ||||||||| | | |||||||||||||||||||||||||||||| Sbjct 24100 GCGGGTGGCGCCACTATTTAGCAAGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 24041 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 24040 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCAAGAAAGAGCTC 23981 Query 249 TCAATCTGTC 258 || ||||||| Sbjct 23980 TC-ATCTGTC 23972 Score = 251 bits (278), Expect = 1e-64 Identities = 219/265 (83%), Gaps = 8/265 (3%) Strand=Plus/Plus Query 1 TACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAG 60 ||| || || |||| |||||||||||||||||||||| |||||| ||||||||||||| Sbjct 6160 TACCCGCTGATTCCGCCAGTGTAGCGCGCGTGCGGCCCCGAACATTCAAGGGCATCACAG 6219 Query 61 ACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 ||||||||||| ||||| | || ||||| || |||| | |||||||||||||| | Sbjct 6220 ACCTGTTATTG-CTCAATC-TCGCGTGGCTAGACGCCACTTGTCCCTCTAAGAAG-TGGA 6276 Query 121 CACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | | ||| | | ||| | |||||||||| | | ||||||||||||||||||| Sbjct 6277 CGCGCACCGCGGCGGGTGGCGCCACTATTTAGCAAGCCAGAGTCTCGTTCGTTATCGGAA 6336 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| Sbjct 6337 TTAACCAGACAAATCGCTCCA-CAACTAAGAACGGCCATGCACCACCACCCACAGAATCA 6395 Query 238 AGAAAGAGCTATCAATCTGTCCTCC 262 || ||||||| |||||||||| ||| Sbjct 6396 AG-AAGAGCTCTCAATCTGTCATCC 6419 >seq424217 Length=14372 Score = 224 bits (248), Expect = 2e-56 Identities = 206/253 (81%), Gaps = 12/253 (5%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 |||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 11226 TCCGCCAGTGTAGCGCGCGTGCGGCCGCGAACATCTAAGGGCATCATCGACCTGTTATTG 11285 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 | ||| || ||||| || |||| | |||||||||||| | | | ||| Sbjct 11286 C-TCATC--TCGCGTGGCTAGACGCCACTTGTCCCTCTAAGAGT---GACGCGCACCGCG 11339 Query 132 GTCGATGGGGC--TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 || || | | ||||||||| | | ||||||||||||||||||||||||||||||| Sbjct 11340 --CGGTGCGCCACTATTTAGCAAGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAA 11397 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| |||||||||||||||||||||||||||||||||||| |||| |||| ||||||| | Sbjct 11398 ATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAA-CAAG-AAGAGCTCT 11455 Query 250 CAATCTGTCCTCC 262 ||||||||| ||| Sbjct 11456 CAATCTGTCATCC 11468 >seq602514 Length=580 Score = 215 bits (238), Expect = 8e-54 Identities = 180/216 (83%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 46 CTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCC 105 ||| ||||||||||||||||||||||| |||| || | | |||| || |||| | |||| Sbjct 268 CTATGGGCATCACAGACCTGTTATTGC-TCAATCTCGCGT-GGCTAGACGCCACTTGTCC 211 Query 106 CTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGC---TATTTAGCAGGTTAAGGTCT 162 |||||||||| | | | ||| | | ||| || ||||||||| | | |||| Sbjct 210 CTCTAAGAAGTG-GACGCGCACCGCGGCGGGTGGCGCCACTATTTAGCAAGCCAGAGTCT 152 Query 163 CGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 151 CGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCA 92 Query 223 CCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| ||||||||||||||||| |||||||||| Sbjct 91 CCACCCACAGAATCAAGAAAGAGCTCTCAATCTGTC 56 >seq36254 Length=78239 Score = 104 bits (114), Expect = 4e-20 Identities = 191/257 (74%), Gaps = 30/257 (12%) Strand=Plus/Minus Query 12 TCCGTCAGT-GTAGCGCGCGTGCGGCC-CAGAACATCTAAGGGCATCACAGACCTGTTAT 69 |||| |||| ||||| ||||||||| | ||||||||||||| |||||||| | ||||| Sbjct 8376 TCCGCCAGTTGTAGCAGCCGTGCGGCCGCCGAACATCTAAGGG-ATCACAGAACCGTTAT 8318 Query 70 TGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA 129 ||| |||| || | |||||| || || | | |||| |||| |||| | | | || Sbjct 8317 TGC-TCAATCTCGCGTTGGCTAGACGC-ACTTGTCCTTCTA-GAAGT--GGCGCGT--CA 8265 Query 130 TAGTCGATGGGG-----CTATTTAGCAGGTTAAGGTCTCGTTCG-TTATCGGAA--TTAA 181 | | |||| |||||||||| | | || ||||||| |||||| || ||| Sbjct 8264 CGGCGGGTGGGCAGCCACTATTTAGCAAGCGA--GT-TCGTTCGGTTATCGAAAGATTA- 8209 Query 182 CCAGACAAATCA-CTCCACCAACTAAG-AACGGCCATGCACCACCACCCATAGAA-TCAA 238 |||| ||||| |||||||||||||| ||||||||||| |||| ||| |||| |||| Sbjct 8208 -CAGA-AAATCTGCTCCACCAACTAAGAAACGGCCATGCCCCAC--ACCACAGAATTCAA 8153 Query 239 GAAAG-AGCTATCAATC 254 ||||| |||| |||||| Sbjct 8152 GAAAGAAGCTCTCAATC 8136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791882448951