Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq424217 376 4e-102 seq605934 372 5e-101 seq36254 105 1e-20 seq598543 87.8 3e-15 >seq424217 Length=14372 Score = 376 bits (416), Expect = 4e-102 Identities = 262/295 (89%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||| || | | | | || | |||||||||||||||||||||||||||| Sbjct 10043 TACTGAGCAGAATTGCCGTGGCGACAACCTTTCATCAGTAGGGTAAAACTAACCTGTCTC 9984 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 9983 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 9924 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9923 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 9864 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 9863 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCCCTTGCG 9804 Query 240 TCAAATTTCGAGGGAC-TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || || | ||| || | |||||||||||||||||| |||||| ||| ||||||| Sbjct 9803 TCGAACTCCGACGGTCAAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 9749 Score = 365 bits (404), Expect = 8e-99 Identities = 261/295 (88%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||| || | | | | || | |||||||||||||||||||||||||||| Sbjct 3116 TACTGAGCAGAATTGCCGTGGCGACAACCTTTCATCAGTAGGGTAAAACTAACCTGTCTC 3057 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 3056 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 2997 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 2996 AATTCTGCTTCACAATGATA-GAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 2938 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 2937 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC-CTTGCG 2879 Query 240 TCAAATTTCGAGGGAC-TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || || | ||| || | |||||||||||||||||| |||||| ||| ||||||| Sbjct 2878 TCGAACTCCGACGGTCAAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 2824 >seq605934 Length=36846 Score = 372 bits (412), Expect = 5e-101 Identities = 262/295 (89%), Gaps = 3/295 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGT-CATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| ||||| || | | | | || | |||||||||||||||||||||||||||| Sbjct 29073 TACTGAGCAGAATTGCCGTGGCGACAACCTTTCATCAGTAGGGTAAAACTAACCTGTCTC 29014 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||| |||||||||||||||||||||| | Sbjct 29013 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACGCTTGGTG 28954 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 28953 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 28894 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||||||||||||||||||||||||||||||||||||||| |||| || || Sbjct 28893 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACC-CTTGCG 28835 Query 240 TCAAATTTCGAGGGAC-TAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || || | ||| || | |||||||||||||||||| |||||| ||| ||||||| Sbjct 28834 TCGAACTCCGACGGTCAAAAAGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 28780 >seq36254 Length=78239 Score = 105 bits (116), Expect = 1e-20 Identities = 145/192 (76%), Gaps = 28/192 (15%) Strand=Plus/Minus Query 63 ACGGTCTAAACCCAGCTCACG-TTCCCTATTAGTGG-GTGAACAATCCAACGCTTACCGA 120 ||||| |||||||||||| ||||||||| |||| |||| ||||||||||||| | Sbjct 13932 ACGGTAACAACCCAGCTCACCATTCCCTATTGGTGGTGTGA-CAATCCAACGCTTGAAGT 13874 Query 121 ------ATTCTGCTTCGG-----TATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGC 169 ||||||| | ||| |||||||||| ||||||||||||||||| || Sbjct 13873 GGTGATATTCTGCATATCACACATATAGTAGGAAGAGC-GACATCGAAGGATCAAA--GC 13817 Query 170 AA-CGTCGCTATGAA------CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTT 222 || |||||||| || |||||| |||||||| ||||||||||| || ||||||| Sbjct 13816 AATCGTCGCTAAAAATAGAACCGCTTG-CTGCCACA-GCCAGTTATCCTTG--GTAACTT 13761 Query 223 TTCTGGCACCTC 234 ||||| |||||| Sbjct 13760 TTCTGACACCTC 13749 >seq598543 Length=75739 Score = 87.8 bits (96), Expect = 3e-15 Identities = 48/48 (100%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61268 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 61315 Score = 82.4 bits (90), Expect = 1e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 166 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTG 213 |||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 62319 AAGCAACGTCGCTATGAACGCTTGGCTGCCACAAACCAGTTATCCCTG 62366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 848956865376