Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq635311 284 3e-74 seq381947 268 2e-69 seq343668 264 2e-68 >seq635311 Length=476 Score = 284 bits (314), Expect = 3e-74 Identities = 270/339 (80%), Gaps = 7/339 (2%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||||||||| ||| |||| | | |||||||| ||| ||| |||||||||||||||| Sbjct 54 TTTACAATCCGAAAACCGTCTTCC-CTCACGCGGCGTTG-CTGCATCAGGCTTTCGCCCA 111 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 112 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 171 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | | ||| |||||||| || | ||| |||||||| ||||||||||| ||||||||| Sbjct 172 GTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGACTTGGTGAGCCGTTACCTCAC 231 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 |||||| |||||| ||| || ||||| |||| | || | | | ||| | Sbjct 232 CAACTATCTAATCGGACGCGAGCCCATCTTTCAGCGGATTGCTCCTTTGATCACTGTATC 291 Query 242 CTCCCGTA--GGA--CGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTAC 297 | | ||| | | | |||||||||||||| || |||||| || |||||||||| || Sbjct 292 ATGCGGTACTGTAATCTTATGCGGTATTAGCATCTGTTTCCAAATGTTATCCCCCTCTGA 351 Query 298 CAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCT 335 |||||| || || | || ||||||||||||||||| || Sbjct 352 AAGGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACT 390 >seq381947 Length=420 Score = 268 bits (296), Expect = 2e-69 Identities = 284/364 (78%), Gaps = 14/364 (4%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 |||||||||| || |||||||| | | |||||||||| | ||| ||||| |||| ||| Sbjct 362 TTTACAATCCTAAAACCTTCTTCC-CTCACGCGGCATCG-CTGCATCAGAGTTTCCTCCA 305 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 |||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 304 TTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 245 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| | ||||| |||||||| || | ||| ||||||||||||||| |||| |||||| || Sbjct 244 GTGGCCGATCAACCTCTCAGTCCGGCTACTGATCGTCGCCTTGGTAAGCCGTTACCTTAC 185 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCG--CAAGGCCCGAAGGTC---CCCT 236 ||||||||||||| ||| |||||||| |||| || || || || | Sbjct 184 CAACTAGCTAATCAGACGCGAGCTCATCTTTCAGCGATAAATCTTTGATAATCAAACCAT 125 Query 237 GCTTTCTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTA 296 || | || || | |||||||||||| || ||||||| | || |||||||| || Sbjct 124 GCGGT-TCAATTATG--TTATGCGGTATTAACGATCGTTTCCAATCGGTATCCCCCTCTG 68 Query 297 CCAGGCAGATTCCT-AGGCATTACTCACCCGTCCGCCGCT--CTCAAGAGAAGCAAGCTT 353 ||||||||| || | | ||||||||||||||||| || || ||| |||||||||| Sbjct 67 AAAGGCAGATTGCTCACGTGTTACTCACCCGTCCGCCACTAGATC-AGAAAAGCAAGCTT 9 Query 354 CTCT 357 |||| Sbjct 8 CTCT 5 >seq343668 Length=448 Score = 264 bits (292), Expect = 2e-68 Identities = 249/311 (80%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||| ||| || | ||||| |||| ||||||| | || |||||| ||||||||||| Sbjct 105 CACGCGGCGTTG-CTCGGTCAGGGTTTCCCCCATTGCCGAAAATTCCCTACTGCTGCCTC 163 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| |||||||||||| |||||||| | | || |||||||||||||| | Sbjct 164 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCGTCCTCTCAGACCAGCT 223 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||||||||||||||||||| |||||||||||||||||||||| | | | ||| | Sbjct 224 ACCGATCGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAATCGGGCATCGGCCGCT 283 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGG-ACGTATGCGGTATTAG 267 | || |||| ||| | | ||||| |||||| ||| ||| | |||||||||||| Sbjct 284 CCAATTGCGCGAGGTCTTGCGATCCCCCGCTTTCACCCTCAGGTTCTCATGCGGTATTAG 343 Query 268 CGTCCGTTTCCGAAC-GTTA-TCCCCCACTACCAGGCAGATTCCTAGGCATTACTCACCC 325 | || ||| ||| | |||| |||||||| || | || |||| | | ||||||||||| Sbjct 344 CCACCCTTT-CGAGCAGTTACTCCCCCACAACAGGACACGTTCCGATGTATTACTCACCC 402 Query 326 GTCCGCCGCTC 336 || |||| ||| Sbjct 403 GTGCGCCACTC 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1065170598880