Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq605934 96.9 2e-18 seq113065 96.9 2e-18 >seq605934 Length=36846 Score = 96.9 bits (106), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 3/77 (4%) Strand=Plus/Minus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 24411 TCTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 24354 Query 108 GTAATACAACGCAAGCT 124 ||||| |||||| |||| Sbjct 24353 GTAAT-CAACGCGAGCT 24338 Score = 93.3 bits (102), Expect = 3e-17 Identities = 69/77 (90%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||| ||||| || || |||||| ||||||||||| ||||||||||||||||||| Sbjct 5975 TCTCACTAAACCATT-CAATCCGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 6032 Query 108 GTAATACAACGCAAGCT 124 ||||| |||||| |||| Sbjct 6033 GTAAT-CAACGCGAGCT 6048 >seq113065 Length=6675 Score = 96.9 bits (106), Expect = 2e-18 Identities = 70/77 (91%), Gaps = 3/77 (4%) Strand=Plus/Plus Query 48 TCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGAC 107 ||||||||| ||||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 2327 TCTCACTAAACCATT-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGAC 2384 Query 108 GTAATACAACGCAAGCT 124 ||||| |||||| |||| Sbjct 2385 GTAAT-CAACGCGAGCT 2400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299003459780