Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq635311 392 6e-107 seq381947 374 2e-101 seq343668 194 3e-47 >seq635311 Length=476 Score = 392 bits (434), Expect = 6e-107 Identities = 274/309 (89%), Gaps = 2/309 (1%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| Sbjct 85 GGCGTTGCTGCATCAGGCTTTCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 144 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 145 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 204 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| ||||||| || ||| ||||||||||| |||||||| ||||||||||||||||| Sbjct 205 CGTCGACTTGGTGAGCCGTTACCTCACCAACTATCTAATCGGACGCGAGCCCATCTTTCA 264 Query 181 GC-GATAAAT-CTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGT 238 || ||| | ||||| ||| | || |||| | || | | ||||||||||||||| | Sbjct 265 GCGGATTGCTCCTTTGATCACTGTATCATGCGGTACTGTAATCTTATGCGGTATTAGCAT 324 Query 239 TCGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCC 298 ||||||||| ||||| || ||||||||||||||||||||||| ||||||||||||||| Sbjct 325 CTGTTTCCAAATGTTATCCCCCTCTGAAAGGCAGGTTGCTCACGCGTTACTCACCCGTCC 384 Query 299 GCCACTAAG 307 ||||||||| Sbjct 385 GCCACTAAG 393 >seq381947 Length=420 Score = 374 bits (414), Expect = 2e-101 Identities = 266/305 (87%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| |||||||||||| |||||| |||||||||||||| ||||||||||||||||||||| Sbjct 331 GGCATCGCTGCATCAGAGTTTCCTCCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAG 272 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| Sbjct 271 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGATCAACCTCTCAGTCCGGCTACTGAT 212 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 ||||| |||||| || ||| || |||||||| |||||| | ||||||| ||||||||| Sbjct 211 CGTCGCCTTGGTAAGCCGTTACCTTACCAACTAGCTAATCAGACGCGAGCTCATCTTTCA 152 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 |||||||||||||| | | || |||| | | | | ||||||||||||| || || Sbjct 151 GCGATAAATCTTTGATAATCAAACCATGCGGTTCAATTATGTTATGCGGTATTAACGATC 92 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||||| || ||| || ||||||||||||| ||||||||||||||||||||||||||| Sbjct 91 GTTTCCAATCGGTATCCCCCTCTGAAAGGCAGATTGCTCACGTGTTACTCACCCGTCCGC 32 Query 301 CACTA 305 ||||| Sbjct 31 CACTA 27 >seq343668 Length=448 Score = 194 bits (214), Expect = 3e-47 Identities = 140/162 (86%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||||| ||| |||||||||||||||||| || || ||| ||||||||||||||||| Sbjct 110 GGCGTTGCTCGGTCAGGGTTTCCCCCATTGCCGAAAATTCCCTACTGCTGCCTCCCGTAG 169 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||||| || |||||||| || ||||||||| Sbjct 170 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGGTCGTCCTCTCAGACCAGCTACCGAT 229 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGG 162 ||||| ||||||| || ||| ||||||||||| |||||||| Sbjct 230 CGTCGCCTTGGTGAGCCTTTACCTCACCAACTAGCTAATCGG 271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 992039483136