Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq605934 93.3 5e-17 seq113065 93.3 5e-17 seq424217 80.6 3e-13 >seq605934 Length=36846 Score = 93.3 bits (102), Expect = 5e-17 Identities = 141/192 (73%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 6806 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTACTGTTCAGGCG 6864 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 || |||||||||||||||| |||||| |||| ||||| || | || ||||| ||| Sbjct 6865 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCCCTCCTGGCAC 6924 Query 129 -CAATGAAG-GCATACGGGC---TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 |||| ||| ||| ||||| ||| ||||| | ||| || |||||| | |||| Sbjct 6925 TCAATTAAGAGCA-CCGGGCGAGAAACCGAGAGG-AAGGCCAGGACTTGCAGTGCACGCC 6982 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 6983 TCGCGGCGGACC 6994 Score = 89.7 bits (98), Expect = 6e-16 Identities = 141/192 (73%), Gaps = 10/192 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 17772 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTACTGTTCAGGCG 17830 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 || |||||||||||||||| |||||| |||| ||||| || | || ||||| ||| Sbjct 17831 CGAGGCCTGCTTTGAACACTCCAATTTT-TCAAAGTAAACGTTCCGGCCCCTCCTGGCAC 17889 Query 129 -CAATGAAG-GCATACGGGC---TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 |||| ||| ||| ||||| ||| ||||| | ||| || |||||| | |||| Sbjct 17890 TCAATTAAGAGCA-CCGGGCGAGAAACCGAGAGG-AAGGCCAGGACTTGCAGTGCACGCC 17947 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 17948 TCGCGGCGGACC 17959 Score = 86.0 bits (94), Expect = 7e-15 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 23584 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTACTGTTCAGGCG 23526 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCC 122 || |||||||||||||||| |||||| |||| ||||| || | || ||||| Sbjct 23525 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCCCTCC 23472 >seq113065 Length=6675 Score = 93.3 bits (102), Expect = 5e-17 Identities = 141/192 (73%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 10 AAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGGGCG 69 |||||||| ||||| || | ||||||||| ||||||||||||| | ||| |||| Sbjct 3164 AAACCAACGCAATAGAACCG-AGGTCCTATTCCATTATTCCATGCTCTACTGTTCAGGCG 3222 Query 70 TAAG-CCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCACAC 128 || |||||||||||||||| |||||| |||| ||||| || | || ||||| ||| Sbjct 3223 CGAGGCCTGCTTTGAACACTCCAATTTTTTCAAAGTAAACGTTCCGGCCCCTCCTGGCAC 3282 Query 129 -CAATGAAG-GCATACGGGC---TCACCAAGAGGTAGGGCTGGGTAATGCAGTACTCGCC 183 |||| ||| ||| ||||| ||| ||||| | ||| || |||||| | |||| Sbjct 3283 TCAATTAAGAGCA-CCGGGCGAGAAACCGAGAGG-AAGGCCAGGACTTGCAGTGCACGCC 3340 Query 184 GTGAGGCGGACC 195 | |||||||| Sbjct 3341 TCGCGGCGGACC 3352 >seq424217 Length=14372 Score = 80.6 bits (88), Expect = 3e-13 Identities = 141/195 (72%), Gaps = 14/195 (7%) Strand=Plus/Plus Query 9 GAAACCAACAAAATAGGGACGCACGTC-CTATTCTATTATTCCATGCTAATGTATTCGGG 67 ||||||||| ||||| || ||| |||||| ||||||||||||| | ||| || Sbjct 11846 GAAACCAACGCAATAGAACCGA--GTCGCTATTCCATTATTCCATGCTCTACTGTTCAGG 11903 Query 68 CGTAAGCCTGCTTTGAACACTC-TAATTTTCTCAAGGTAAAAGTCCTGGTTCCTCCGCAC 126 || |||||||||||||||||| |||||| |||| ||||| || | || ||||| | Sbjct 11904 CGCGAGCCTGCTTTGAACACTCACAATTTTTTCAAAGTAAACGTTCCGG--CCTCCTGGC 11961 Query 127 AC-CAATGAAG-GCATACGGGC---TCACCAAGAGGTAGGGCTGGGTAAT-GCAGTACTC 180 || |||| ||| || |||||| ||| ||||| | ||| || | ||||| | | Sbjct 11962 ACTCAATTAAGAGC--ACGGGCGAGAAACCGAGAGGAAAGGCCAGGACTTGGCAGTGCAC 12019 Query 181 GCCGTGAGGCGGACC 195 ||| | |||||||| Sbjct 12020 GCCTCGCGGCGGACC 12034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591526648614