Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq605934 114 1e-23 seq113065 105 7e-21 seq424217 78.8 9e-13 seq380862 78.8 9e-13 >seq605934 Length=36846 Score = 114 bits (126), Expect = 1e-23 Identities = 136/179 (76%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| ||||||||||||||| || ||| | | || Sbjct 6906 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAACAGTAGAGCA 6847 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||| || ||||| | ||| | | ||||| Sbjct 6846 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGGAACTCGAGGTAAT 6789 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | |||||| | ||||| ||| | ||||||||||||||||| Sbjct 6788 GATTAAGAGGGACTGACGGGGGCATTCGTATTGCGGTGTGAGAGGTGAAATTCTTGGAT 6730 Score = 107 bits (118), Expect = 2e-21 Identities = 135/179 (75%), Gaps = 5/179 (3%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTT-GCTCGAATACATTACCA 68 || |||||||||||||| || ||| ||||||||||||||| || ||| | | || Sbjct 17871 ACGTTTACTTTGAAAAA-TTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAACAGTAGAGCA 17813 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCG-TAAT 127 ||||||||| ||||||||| | |||||||||| || ||||| | ||| | | | |||| Sbjct 17812 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGGAACTCGAGGTAAT 17755 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | |||||| | ||||| ||| | ||||||||||||||||| Sbjct 17754 GATTAAGAGGGACTGACGGGGGCATTCGTATTGCGGTGTGAGAGGTGAAATTCTTGGAT 17696 Score = 98.7 bits (108), Expect = 1e-18 Identities = 134/179 (75%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| ||||||||||||||| || ||| | | || Sbjct 23484 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAACAGTAGAGCA 23543 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAAT 127 ||||||||| ||||||||| | |||||||||| || ||||| | ||| | | || || Sbjct 23544 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGGAACTCGAGGTTAT 23601 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| | | ||| | ||||| || ||||| ||| | ||||||||||||||||| Sbjct 23602 GAT-TAGAGGGACTGACGGGGCATTC-GTATTGCGGTGTGAGAGGTGAAATTCTTGGAT 23658 >seq113065 Length=6675 Score = 105 bits (116), Expect = 7e-21 Identities = 134/179 (75%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT-TTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| ||||||||||||||| || ||| | | || Sbjct 3264 ACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAACAGTAGAGCA 3205 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||||| | |||||||||| || ||||| | | || |||||| Sbjct 3204 TGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT-TCGAACTCGAGGTAATG 3147 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATT-CAATTGTCAAAGGTGAAATTCTTGGAT 186 || || | ||| | |||||| | ||||| ||| | ||||||||||||||||| Sbjct 3146 ATTAAGAGGGACTGACGGGGGCATTCGTATTGGCGGTGTGAGAGGTGAAATTCTTGGAT 3088 >seq424217 Length=14372 Score = 78.8 bits (86), Expect = 9e-13 Identities = 131/181 (72%), Gaps = 9/181 (5%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTA-GAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 || ||||||||||||||||| ||| ||||||||||||| || ||| | | || Sbjct 11947 ACGTTTACTTTGAAAAAATTGTGAGTGTTCAAAGCAGGCTCGCGCCTGAACAGTAGAGCA 11888 Query 69 TGGAATAATAGAATAG-GACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGC-CCGTAA 126 ||||||||| |||||| ||| |||||||||| || |||||| ||| | | |||| Sbjct 11887 TGGAATAATGGAATAGCGAC--TCGGTTCTATTGCGTTGGTTTC--GGAACTCGAGGTAA 11832 Query 127 TGATAAATACGGATAGTCGGG-GGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 |||| || | ||| | |||| | || |||| ||| | ||||||||||| |||| Sbjct 11831 TGATTAAGAGGGACTGACGGGCGCATTCGATATTGCGGTGTGAGAGGTGAAATTC-TGGA 11773 Query 186 T 186 | Sbjct 11772 T 11772 >seq380862 Length=27576 Score = 78.8 bits (86), Expect = 9e-13 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 10 ACTTTTACTTTGA-AAAAATTAGAGCGTTCAAAGCAGGCCTT-TGCTCGAATACATTACC 67 || ||| ||||| ||||||| || ||||||||||||||||| || ||| | | | Sbjct 16767 ACGTTTGTTTTGACAAAAATTGGAACGTTCAAAGCAGGCCTTCCGCCTGAACAGTGGAGC 16826 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||||||||| | |||||||||| || ||| | | || ||||| Sbjct 16827 ATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTGTTTGTCACTCGATGTAAT 16885 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 ||| || | ||| | ||||| | || || ||| | ||||||||||| ||||| Sbjct 16886 GATTAAGAGGGACTG-AGGGGGCATTCGTTTTGCGGTGTGAGAGGTGAAATTCGTGGAT 16943 Score = 73.4 bits (80), Expect = 4e-11 Identities = 79/101 (78%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 10 ACTTTTACTTTGA-AAAAATTAGAGCGTTCAAAGCAGGCCTT-TGCTCGAATACATTACC 67 || ||| ||||| ||||||| || ||||||||||||||||| || ||| | | | Sbjct 15585 ACGTTTGTTTTGACAAAAATTGGAACGTTCAAAGCAGGCCTTCCGCCTGAACAGTGGAGC 15644 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGT 108 |||||||||| ||||||||| | |||||||||| || ||| Sbjct 15645 ATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGT 15684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 508840127840