Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq635311 251 2e-64 seq343668 241 3e-61 seq381947 228 2e-57 >seq635311 Length=476 Score = 251 bits (278), Expect = 2e-64 Identities = 312/423 (74%), Gaps = 23/423 (5%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| ||||| || ||||| |||||||| | |||||||||||||| |||||||| Sbjct 54 TTTACAATCCGAAAACCGTCTTCCCTCACGCGGCGTTGCTGCATCAGGCTTTCGCCCATT 113 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 114 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT 173 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | ||| |||||||| || |||| |||||||| || |||| ||| ||||| | ||| Sbjct 174 GGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGACTTGGTGAGCCGTTACCTCACCA 233 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAG-TGAGAGGCCCGAAGGTCCCCCT---CT 240 |||| |||||| | | | |||| || || | || | || | | | Sbjct 234 ACTATCTAATCGGACGCGAGCCCATCTTTCAGCGGATTGCTCCTTTGATCACTGTATCAT 293 Query 241 TTGGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA 300 ||| || | ||||||||||||||| | ||||||| |||||||||||| | Sbjct 294 GCGGTACTGTAATCTTATGCGGTATTAGCATCTGTTTCCAAATGTTATCCCCCTCTGAAA 353 Query 301 GGCA-GTTTCCCAGACATTACTCACCCGTCCGCCACT---------CGTC-----AGCGA 345 |||| ||| | || | |||||||||||||||||||| ||| | ||| Sbjct 354 GGCAGGTTGCTCACGCGTTACTCACCCGTCCGCCACTAAGTTCAAAAGTCATTTGACCGA 413 Query 346 AGCAGCAAGCTGCTTCCTG-TTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGT 404 || ||| | | || | |||||||||||||||||||||||| ||||||||||| Sbjct 414 AGTCGCA---TTCCTCAAGAACTCCGTTCGACTTGCATGTGTTAGGCACGCCGCCAGCGT 470 Query 405 TCA 407 ||| Sbjct 471 TCA 473 >seq343668 Length=448 Score = 241 bits (266), Expect = 3e-61 Identities = 270/355 (76%), Gaps = 12/355 (3%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||| |||| ||||||| | |||||||| | ||| ||||| || | |||||| Sbjct 79 TTTACATAACGAATTACTTCTTCCTTCACGCGGCGTTGCTCGGTCAGGGTTTCCCCCATT 138 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | || |||||| ||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 139 GCCGAAAATTCCCTACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 198 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| |||| ||||||||||||||||| ||||||||||| |||| ||| ||||| | ||| Sbjct 199 GGCCGGTCGTCCTCTCAGACCAGCTACCGATCGTCGCCTTGGTGAGCCTTTACCTCACCA 258 Query 185 ACTAGCTAATC--CCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 ||||||||||| |||| || ||| || | | |||| | | |||||| |||| Sbjct 259 ACTAGCTAATCGGGCATC--GGCCGCTCCAATTGCGCGAGGTCTTGCGATCCCCCGCTTT 316 Query 243 GGTCTTGCGACGTT---ATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATC 299 | | | ||| ||||||||||||||||| |||| || |||| |||| || | Sbjct 317 CACCCT--CAGGTTCTCATGCGGTATTAGCCACCCTTTCGAGCAGTTACTCCCCCACAAC 374 Query 300 AGG-CAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGC--GAAGCAGC 351 ||| || |||| | ||||||||||||| ||||||||| || | | |||||| Sbjct 375 AGGACACGTTCCGATGTATTACTCACCCGTGCGCCACTCGCCACCCGGGAGCAGC 429 >seq381947 Length=420 Score = 228 bits (252), Expect = 2e-57 Identities = 262/349 (75%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||| || || |||||||| |||||||||| |||||||||| || | ||||| Sbjct 362 TTTACAATCCTAAAACCTTCTTCCCTCACGCGGCATCGCTGCATCAGAGTTTCCTCCATT 303 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||| Sbjct 302 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT 243 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||| | ||| |||||||| || |||| ||||||||||| ||| ||| ||||| ||| Sbjct 242 GGCCGATCAACCTCTCAGTCCGGCTACTGATCGTCGCCTTGGTAAGCCGTTACCTTACCA 183 Query 185 ACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCC--CGAAGGTCCCCCTCTTT 242 ||||||||||| | | | ||||| || || | | || || | | Sbjct 182 ACTAGCTAATCAGACGCGAGCTCATCTTTCAGCGATAAATCTTTGATAATCAAACCATGC 123 Query 243 GGTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGG 302 ||| | |||||||||||||| | | |||||||| | | |||||||||| ||| Sbjct 122 GGTTCAATTATGTTATGCGGTATTAACGATCGTTTCCAATCGGTATCCCCCTCTGAAAGG 63 Query 303 CAG-TTTCCCAGACATTACTCACCCGTCCGCCACTCG-TCAGCGAAGCA 349 ||| || | || |||||||||||||||||||| | |||| ||||| Sbjct 62 CAGATTGCTCACGTGTTACTCACCCGTCCGCCACTAGATCAGAAAAGCA 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1214612444096