Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq113065 273 4e-71 seq605934 260 3e-67 seq424217 149 1e-33 seq36254 80.6 5e-13 >seq113065 Length=6675 Score = 273 bits (302), Expect = 4e-71 Identities = 219/259 (85%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| || |||| | | || ||||| |||||||||||||||| Sbjct 2625 CTTCTTAGAGGGACAAGTGGCGTCTAGCC-ACGCGAGATTGAG-CAATAACAGGTCTGTG 2568 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA-TC 189 |||||||||||||||| |||||||||||||||||||||| | || || || || || | Sbjct 2567 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGGCGGAATCAGCGGGTACACTG 2508 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||||||||||||||||||| | || ||| |||| ||||||||| | ||| Sbjct 2507 CCCTTGGCCGGAAGGTCTGGGTAATCCGCTGAACCTCCTCCGTGATGGGGATAGGGAATT 2448 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | ||| |||||||||| || |||||||||| ||||||||| ||||||||| Sbjct 2447 GCAATTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGAT 2388 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 2387 TACGTCCCTGCCCTTTGTA 2369 >seq605934 Length=36846 Score = 260 bits (288), Expect = 3e-67 Identities = 217/259 (84%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| || |||| | | || ||||| |||||||||||||||| Sbjct 6272 CTTCTTAGAGGGACAAGTGGCGTCTAGCC-ACGCGAGATTGAG-CAATAACAGGTCTGTG 6215 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA-TC 189 |||||||| |||||| |||||||||||||||||||||| | || || || || || | Sbjct 6214 ATGCCCTTGAATGTTCGGGGCCGCACGCGCGCTACACTGGCGGAATCAGCGGGTACACTG 6155 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||||||||||||||||||| | || ||| |||| ||||||||| | ||| Sbjct 6154 CCCTTGGCCGGAAGGTCTGGGTAATCCGCTGAACCTCCTCCGTGATGGGGATAG-GAATT 6096 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | ||| |||||||||| || |||||||||| ||||||||| ||||||||| Sbjct 6095 GCAATTATTTCCCTTGAACGAGGAATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGAT 6036 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 6035 TACGTCCCTGCCCTTTGTA 6017 Score = 257 bits (284), Expect = 3e-66 Identities = 216/259 (83%), Gaps = 7/259 (3%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| || ||| | | || ||||| |||||||||||||||| Sbjct 24116 CTTCTTAGAGGGACAAGTGGCGTCTAGC--ACGCGAGATTGAG-CAATAACAGGTCTGTG 24172 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCA-TC 189 |||||||||||||||| |||||||||||||||||||||| | || || || | || | Sbjct 24173 ATGCCCTTAGATGTTCGGGGCCGCACGCGCGCTACACTGGCGGAATCAGCG--TACACTG 24230 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 ||||||||||||||||||||||||| | || ||| |||| ||||||||| | ||| Sbjct 24231 CCCTTGGCCGGAAGGTCTGGGTAATCCGCTGAACCTCCTCCGTGATGGGGATAGGGAATT 24290 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | ||| ||||||| || || |||||||||| ||||||||| ||||||||| Sbjct 24291 GCAATTATTTCCCTTGAACGAGGGATTCCCAGTAAGCGCGAGTCATCAGCTCGCGTTGAT 24350 Query 310 TACGTCCCTGCCCTTTGTA 328 ||||||||||||||||||| Sbjct 24351 TACGTCCCTGCCCTTTGTA 24369 >seq424217 Length=14372 Score = 149 bits (164), Expect = 1e-33 Identities = 161/203 (79%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 74 TCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGAT 132 |||||||||||| | ||| || |||| | | || | ||| |||||||||||| |||| Sbjct 11324 TCTTAGAGGGACAAGTGGCGTCTAGCC-ACGCGAGAT-GAG-CAATAACAGGTCGATGAT 11268 Query 133 GCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACC 192 |||||||||||||| ||||||||||||||||||||| | || || || || || || Sbjct 11267 GCCCTTAGATGTTCGCGGCCGCACGCGCGCTACACTGGCGGA-TCAGCGGGTACACTGCC 11209 Query 193 TTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCA 252 | |||||||||||||||||||| | || ||| |||| ||||||||| | |||||| Sbjct 11208 CTTGCCGGAAGGTCTGGGTAATC-GCTGAACCTCCTCCGTGATGGGGATAG-GAATTGCA 11151 Query 253 ATTATTGCTCTTCAACGAGGAAT 275 |||||| | ||| |||||||||| Sbjct 11150 ATTATTTC-CTTGAACGAGGAAT 11129 >seq36254 Length=78239 Score = 80.6 bits (88), Expect = 5e-13 Identities = 152/208 (73%), Gaps = 18/208 (9%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||| ||| |||| | | || |||| | | || ||||| ||||||| | ||||||| Sbjct 8275 CTTCT-AGAAGGACAAGTGCGTCTAGCCAACGCGAGATTGAG-CAATAACGGTTCTGTGA 8332 Query 132 TGCCCTTAGATGTTCTG-GGCCGCACGCGCGCTACA-CTGACAGAGCCAACGAGTTCATC 189 | ||||||||||||| | ||||||||| |||||| ||| | || || || | | Sbjct 8333 T-CCCTTAGATGTTCGGCGGCCGCACGGCTGCTACAACTGGCGGAATCAGCGGC--CCTG 8389 Query 190 ACCTTGGCCGGAA-GGTCTGGGTAATCTTG---TTAAACTCTGTCGTGCTGGGGATAGAG 245 |||||||||||| ||||| ||||| || ||| ||| |||| ||||||||| | Sbjct 8390 -CCTTGGCCGGAAGGGTCT-GGTAACGCTGACAATAACCTC---CGTGATGGGGATAG-G 8443 Query 246 CATTGCAATTATTGCTCTTCAACGAGGA 273 |||||||||||| | | |||||||| Sbjct 8444 AATTGCAATTATT-CGGCTGAACGAGGA 8470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 941165663488