Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq250674 127 2e-24 seq286747 123 2e-23 seq251981 123 2e-23 seq620319 104 2e-17 seq407716 104 2e-17 seq496440 82.4 6e-11 seq320776 82.4 6e-11 >seq250674 Length=71378 Score = 127 bits (140), Expect = 2e-24 Identities = 523/819 (64%), Gaps = 17/819 (2%) Strand=Plus/Plus Query 61132 GAGGAGGTCGATTTGTCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAA 61191 || || || |||||||| |||||| | || || ||| || | || | |||| | Sbjct 2879 GAAGAAGTGGATTTGTCTAAAGACGTAAACGATTGGCTTGGTCTCACGGATGATGAAAGA 2938 Query 61192 CATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 ||||| ||| | ||||| || || ||||| || || ||||| || || || ||| Sbjct 2939 CATTTTATTTTGTACGTGTTAGCCTTTTTTGCTGCCAGTGATGGTATTGTAAACGAAAAT 2998 Query 61252 TTATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 ||| || ||| || | || || ||| | | || | || | ||||| || || Sbjct 2999 TTAATGCTACGCTTTAGTCGTGAAGTTCAAATTCCAGAAGTCCGATACTTCTATGGATTT 3058 Query 61312 CAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATC 61371 |||||||||||||| ||| |||| || || ||||| | || ||||| |||||| | Sbjct 3059 CAGATTGCCATGGAAAATATCCATTCCGAAATGTATTCGCTGCTGATCGAAACGTACGTA 3118 Query 61372 AGGGAGCGGGCGGAACGTGAACGA---TTGTTCAATGCCATCGAGACGATACCGGCGGTG 61428 | || | ||| ||| | ||| | ||||| |||||| || ||| | Sbjct 3119 AAAGATT---CCAAACAAAAACAACATTTGATAAATGCAATCGAGGAAATTCCGTGTATT 3175 Query 61429 AAGCGGAAAGCGGATTGGGCCTTCAATTGGAT---CACCAGTACAACGGCTACATTTGGT 61485 | ||||| | ||||| || | ||||| || || |||| || | |||||| Sbjct 3176 CAAAAAAAAGCAAAATGGGCATTAGACTGGATAGACAACAATACA---GCAAGTTTTGGT 3232 Query 61486 GAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCA 61545 || | | |||||||| ||||| || || | ||||| || ||||||| || Sbjct 3233 ACCCGCCTTGTTGCATTTGCCGTGGTGGAAGGCATTTTTTTTTCGGGTGCGTTTGCTGCC 3292 Query 61546 ATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATA 61605 || |||||| | || || | || |||||||| | || || ||| || ||||| Sbjct 3293 ATATTTTGGCTAAAAAAGAGAGGTAAATTGCCCGGTTTAACGTTTGCCAACGAACTGATA 3352 Query 61606 TCACGCGACGAGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTG 61665 ||||| ||||| |||||||||||||||| | | |||| ||| ||| | Sbjct 3353 AGTCGCGATGAGGGATTGCATTGTGATTTTGCGTGTCTCCTATACAAG---TATGTAAAA 3409 Query 61666 AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAG 61725 ||| || | | | | | | || ||| ||| || || || ||| || Sbjct 3410 AATAAACCAGATACGTCTCATATTTATCACATGGTTAATGAAGCTGTTGAGATTGAAAAG 3469 Query 61726 GAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCG 61785 ||||| | || || || || | | | || ||||| || || || ||| Sbjct 3470 GAATTCTTAACGGATGCCTTTCAATGCGCTCTAATCGGGATCAACGCAACTCTGATGGGA 3529 Query 61786 CAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA-TTTGGGTATGAAGCGGATCTA 61844 |||||||| |||||||||||||| | || | | || | || || || || | || Sbjct 3530 CAGTATATAGAATTTGTTGCCGATAGACTACTACTTGAGCTCGGATACGATAAGG-TGTA 3588 Query 61845 TAATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTT 61904 |||| | || |||||||| || ||||| | |||||| |||| |||||||| ||||| Sbjct 3589 TAATGTTGACAATCCATTTGACTTTATGGAAAACATTTCGTTGGAAGGCAAGACTAATTT 3648 Query 61905 TTTCGAGAAACGTGTAGGCGACTATCAACGTTTGGGTGT 61943 ||| || | ||| || || || |||||| ||||||| Sbjct 3649 TTTTGAAAGACGAGTTGGGGAATATCAAAAAATGGGTGT 3687 >seq286747 Length=126893 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||| || || | || | ||| || | ||| || |||||||||| |||||| ||| Sbjct 122709 TCTCCCCACACGTCTGCGAGTCCTGGGCATTCGTGGGGGCACATCAGCGTCCAATCGCCA 122650 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || || || || | ||| || || || || | ||| ||||||||||| || || || Sbjct 122649 TCTTGCTCAACCCTCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAAAAGGTCACGG 122590 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 || || |||||||| | ||||| || || |||| ||||| || |||||||| ||| Sbjct 122589 GCACGCTGCTCCTCTTTCCCGTGGTTCTTCTTGCAGTCTAGGAAGTCGAAGATGTCCGCA 122530 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||| || || |||||||| || || Sbjct 122529 TGCCAGGGCTCGAGGTAGATTGCAAA 122504 >seq251981 Length=36728 Score = 123 bits (136), Expect = 2e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||| || || | || | ||| || | || || |||||||||| |||||| ||| Sbjct 21353 TCTCCCCACACGTCTGCGAGTCCTGGGCATTCATGGGGGCACATCAGCGTCCAATCGCCA 21412 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || || || || | ||| || || || || | ||| ||||||||||| || || || Sbjct 21413 TCTTGCTCGACCCTCTTCATGAACAGGTCGGGCACCCACAGGGCGTAGAAAAGGTCACGG 21472 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 || || |||||||| | ||||| || || |||| ||||| || |||||||| ||| Sbjct 21473 GCACGCTGCTCCTCTTTCCCGTGGTTCTTCTTGCAGTCTAGGAAGTCGAAGATGTCCGCA 21532 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAA 66468 ||||| || || |||||||| ||||| Sbjct 21533 TGCCACGGCTCGAGGTAGATTGCGAA 21558 >seq620319 Length=78974 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || | | |||||| || | | ||||| | ||||||||| ||||| | || Sbjct 13472 GAACCTTTACTACGAGAGAACCCAAGGAGGTTCGTCATCTTCCCCATCCAGTATCACGAC 13531 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||||||| || || || || || |||||||| | ||| |||||||| | Sbjct 13532 ATCTGGCACATGTACAAGAAAGCCGAGGCATCGTTCTGGACAGCGGAAGAGGTCGACCTC 13591 Query 61147 TCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 ||||| || || | | |||| | | | | ||| ||| | || ||||| ||| Sbjct 13592 TCCAAGGATCTGGAACATTGGGCAAAGCTGA-CGAAGAATGAGAAGCACTTCATCTCACA 13650 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 ||| ||||| ||||| || || ||||| ||||||||||| ||| Sbjct 13651 TGTCTTGGCATTCTTCGCAGCAAGTGACGGCATCGTCAATGAAAAT 13696 Score = 89.7 bits (98), Expect = 4e-13 Identities = 143/203 (70%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||| || |||||||| | ||| || | ||| || | ||||| |||| | Sbjct 15459 TGTTCAACGCTATCGAGACTCTTCCGTGTGTAACCAAGAAGGCACAGTGGGCGCTCAACT 15518 Query 61457 GGATCAC-CAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAG 61515 ||||| | || |||| |||| || ||| | | | | |||||||| | || ||| Sbjct 15519 GGATCGCACACGACAA-GGCTGATTTCGGTACAAGGGTAGTTGCATTTGCCGCCGTAGAG 15577 Query 61516 GGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATG 61575 || | || ||| ||| || ||||| || ||||| |||||||||||| | ||||| ||| Sbjct 15578 GGAATCTTCTTCTCTGGCTCCTTTGCTGCCATCTTCTGGTTGAAGAAAAGGGGACTAATG 15637 Query 61576 CCCGGTCTGACCTTCAGCAATGA 61598 ||||| || |||||| ||| || Sbjct 15638 CCCGGACTCACCTTCTCCAACGA 15660 >seq407716 Length=13296 Score = 104 bits (114), Expect = 2e-17 Identities = 160/226 (71%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 ||||| || | | |||||| || | | || || | ||||||||| ||||| | || Sbjct 6762 GAACCTTTACTACGAGAGAACCCAAGGAGGTTTGTCATCTTCCCCATCCAGTATCACGAC 6703 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 || |||| ||||||||| || || || || || |||||||||| ||| |||||||| | Sbjct 6702 ATCTGGCACATGTACAAGAAAGCCGAGGCGTCGTTCTGGACGGCGGAAGAGGTCGACCTC 6643 Query 61147 TCCAAAGACATGAATGACTGGG-AGCGTTTATCGAGCGGTGAACAACATTTCATTAAACA 61205 ||||| || || | | |||| | | | | ||| ||| | || ||||| ||| Sbjct 6642 TCCAAGGATCTGGAACATTGGGCAAAGCTGA-CGAAGAATGAGAAGCACTTCATCTCACA 6584 Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT 61251 || ||||| |||||||| || ||||| ||||||||||| ||| Sbjct 6583 CGTCTTGGCATTCTTTGCAGCCAGTGACGGCATCGTCAATGAAAAT 6538 >seq496440 Length=42271 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| ||||| ||||| || || || || |||||||| |||||| | ||||| | Sbjct 24953 CATGTCTTGGCCTTCTTCGCTGCCAGCGATGGAATCGTCAACGAGAATCTGGTGGAAAGA 24894 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || ||||| || | |||||||| ||||| || |||||||||||||| ||| Sbjct 24893 TTCAGTCAAGAGGTCCAGATACCGGAGGCGAAGTGTTTTTATGGCTTCCAGATTGCAATG 24834 Query 61324 GAG 61326 ||| Sbjct 24833 GAG 24831 >seq320776 Length=21916 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 61204 CATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGT 61263 ||||| ||||| |||||||| || || || |||||||| |||||| | ||||| | Sbjct 20823 CATGTCTTGGCCTTCTTTGCTGCCAGCGATGGAATCGTCAACGAGAATCTGGTGGAAAGA 20764 Query 61264 TTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATG 61323 ||| || ||||| || | ||||||| ||||| || |||||||||||||| ||| Sbjct 20763 TTCAGTCAAGAGGTCCAGATACCGGAGGCCAAGTGTTTTTATGGCTTCCAGATTGCAATG 20704 Query 61324 GAG 61326 ||| Sbjct 20703 GAG 20701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394481161659440