Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eucidaris_20tribuloides_20[genbank_20GCA_5F001188425.1_202015-04-14] 637,071 sequences; 2,187,261,492 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq602597 95.1 5e-14 >seq602597 Length=88947 Score = 95.1 bits (104), Expect = 5e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||||||||| | ||| | ||||| || ||||||||||| | || ||||| | ||| Sbjct 41338 ATCTCCTTGAGGCGGGGTACTCCCAGCGTGACGTTCTTGGCGGACACACCGGCGTAATGG 41397 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 ||||| | |||||||| ||| ||| ||||| || | | ||||| | ||||| ||| Sbjct 41398 AAGGTGTTGAGGGTCATCTGGGTGGCAGGCTCACCCAGGGACTGGGCAGCGAGAGCTCCT 41457 Query 349202 ACCATCTCGCCGGGCGCGGC 349221 |||||||| || || || || Sbjct 41458 ACCATCTCACCCGGTGCAGC 41477 Score = 86.0 bits (94), Expect = 3e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 ||||||||||| | || | ||||| || ||||||||||| | || ||||| | ||| Sbjct 44669 ATCTCCTTGAGGCGAGGTACTCCCAGTGTGACGTTCTTGGCGGACACACCGGCGTAATGG 44728 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 ||||| | |||||||| ||| ||| || || || | | ||||| | ||||| ||| Sbjct 44729 AAGGTATTGAGGGTCATCTGGGTGGCAGGTTCACCCAGGGACTGGGCAGCGAGAGCTCCT 44788 Query 349202 ACCATCTCGCCGGGCGCGGC 349221 |||||||| || || || || Sbjct 44789 ACCATCTCACCCGGTGCAGC 44808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2067725748141898