Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq545 268 4e-69 seq1890 170 8e-40 seq1899 161 4e-37 >seq545 Length=18043 Score = 268 bits (296), Expect = 4e-69 Identities = 240/299 (80%), Gaps = 3/299 (1%) Strand=Plus/Plus Query 387 TGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATG 446 |||| ||||| ||| | ||||||||| |||||||||||||||||| | ||| ||| Sbjct 9142 TGGCTTAATGACCTTAAATGACCCGTCTTGAAACACGGACCAAGGAGTCCACCATAAATG 9201 Query 447 CGAGTGTTTGGGTGTCAAACCCGTGCGCGTAATGAAAGTGAACGGAGGTGGGAACCCGTG 506 ||||| |||||||| ||||||| | ||| || |||| |||| ||| || | ||| || Sbjct 9202 CGAGTATTTGGGTGCCAAACCCATATGCGAAAGGAAACTGAATGGATATGA-ATCCCTTG 9260 Query 507 AGGGTGCACCATCGACCGATCCTGATGTCTT--CGGATGGATTTGAGTAAGAGCATAGCT 564 ||| ||| ||| ||| ||| || || | || | ||| |||||| | Sbjct 9261 AGGAGGCAATATCATCCGGCTTTGACGTTTTAACTGAAGAGACCGAGATTGAGCATTTAT 9320 Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 9321 GATGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 9380 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 9381 TGGAGGCTCGTAGCGATTCTGACGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 9439 Score = 199 bits (220), Expect = 2e-48 Identities = 149/172 (87%), Gaps = 2/172 (1%) Strand=Plus/Plus Query 33 CTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAA-TGGGAGGTAAATTTCTTCTAA 91 |||| | ||||| |||||||||||||||||| ||||| |||| ||||||| || ||||| Sbjct 8679 CTTCAAAGAGTCAGGTTGTTTGGGAATGCAGC-CTAAAGTGGGTGGTAAATCTCATCTAA 8737 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 |||||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| | Sbjct 8738 AGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAA 8797 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||||| ||||||||||||| || | ||||||||| |||||||||| || ||| Sbjct 8798 CTTTGAAAAGAGAGTTAAACAGTATGTGAAATTGCTGAAAGGGAACCGTTTG 8849 >seq1890 Length=5907480 Score = 170 bits (188), Expect = 8e-40 Identities = 109/119 (92%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| Sbjct 27774 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGACGAAGCCAGAGGAAACTCTGG 27715 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| ||||||| ||||| ||||||||||||||||| || |||||||||||||||| Sbjct 27714 TGGAGGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCGAACTTGGGTATAGGGGCGA 27656 >seq1899 Length=6603 Score = 161 bits (178), Expect = 4e-37 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 |||| | ||| |||||||||||||||||||||||||||||| ||| |||||||| | Sbjct 5026 GAGCGCATCTGGCGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGCCGAAGCCAGGG 4967 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||||| ||||||||||||| |||||||||||||||||| | ||| ||| Sbjct 4966 GAAACTCTGGTGGAGGGCCGCAGCGGTTCTGACGTGCAAATCGATCGTCAGACTTGTGTA 4907 Query 675 TAGGGGCGA 683 ||||||||| Sbjct 4906 TAGGGGCGA 4898 Score = 123 bits (136), Expect = 1e-25 Identities = 124/159 (78%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||||||| ||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 5759 GAGTCGGGTTGTTTGAGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 5700 Query 100 AT--TGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 | |||| || ||||||||| ||||||| |||| ||| | ||||||| |||||| Sbjct 5699 ACCATGGCAAGT--CCGATAGCGAACAAGTACCGTGAGGGAACGTTGAAAAGAACTTTGA 5642 Query 158 AAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 | |||||||| || ||||||||||| ||| | || ||| Sbjct 5641 AGAGAGAGTTCAAGAGCACGTGAAACCGTTCAGAGAGAA 5603 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079957293050