Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Helobdella_20robusta_20[refseq_20GCF_5F000326865.1_202012-12-20] 1,991 sequences; 235,376,169 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1038 264 2e-68 seq545 251 1e-64 seq1951 210 3e-52 seq26 188 1e-45 seq1937 89.7 8e-16 >seq1038 Length=1222 Score = 264 bits (292), Expect = 2e-68 Identities = 216/258 (84%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| || Sbjct 679 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAACGGCATCACAGACCTGTTACTG 620 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 | |||| || | | || | ||| | |||||||||||||| | || | | || | Sbjct 619 C-TCAATCT-CGTGCGACTAAACGCCGCTTGTCCCTCTAAGAAGTCTGCGCCGACGCA-A 563 Query 132 GTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | |||| || |||||||||||| || |||||||||||||||||||||||||||||| Sbjct 562 GACGATCGGCGGACTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 503 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 502 AATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACCGAATCAAGAAAGAGCTC 443 Query 249 TCAATCTGTCCTCCCTCG 266 |||||||||| ||||| Sbjct 442 TCAATCTGTCAATCCTCG 425 >seq545 Length=18043 Score = 251 bits (278), Expect = 1e-64 Identities = 219/273 (80%), Gaps = 18/273 (7%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7491 ACTCGTTGACTATGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 7432 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||||| |||||| ||| || |||| |||||||||| ||| Sbjct 7431 CCTGTTATTGCCT--AACTTCATCCTGCTTAGCGCAGGTAGTTTCTCTAAGAAGACAGAA 7374 Query 122 A--------------CCAACCATA--GTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGT 165 | ||||| | | || | | | |||||||| | ||||||||||| Sbjct 7373 AAGCCGAAGCTTAACCCAACTAAAAAGTTGGTCTGTCTATTTAGTAAAATAAGGTCTCGT 7314 Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 7313 TCGTTATCGGAATTAACCAGACAAATCACTCCACGAACTAAGAACGGCCATGCACCACCA 7254 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||| |||| |||||||||| |||||||||| Sbjct 7253 CCCATAAAATCTAGAAAGAGCTTTCAATCTGTC 7221 >seq1951 Length=497474 Score = 210 bits (232), Expect = 3e-52 Identities = 174/208 (84%), Gaps = 6/208 (3%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 134977 TCCTTCAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG 135036 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATA 131 | |||| || | | || | ||| | |||||||||||||| | || | | || | Sbjct 135037 C-TCAATCT-CGTGCGACTAAACGCCGCTTGTCCCTCTAAGAAGTCTGCGCCGACGCA-A 135093 Query 132 GTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | |||| || |||||||||||| || |||||||||||||||||||||||||||||| Sbjct 135094 GACGATCGGCGGACTATTTAGCAGGCTAGAGTCTCGTTCGTTATCGGAATTAACCAGACA 135153 Query 189 AATCACTCCACCAACTAAGAACGGCCAT 216 |||| ||||||||||||||||||||||| Sbjct 135154 AATCGCTCCACCAACTAAGAACGGCCAT 135181 >seq26 Length=356565 Score = 188 bits (208), Expect = 1e-45 Identities = 139/160 (87%), Gaps = 4/160 (3%) Strand=Plus/Plus Query 102 GTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG---CTATTTAGCAGGTTAAG 158 |||||||||||||| | || | | || || |||| || |||||||||||| || Sbjct 288584 GTCCCTCTAAGAAGTCTGCGCCGACGCA-AGACGATCGGCGGACTATTTAGCAGGCTAGA 288642 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 288643 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 288702 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| |||||||||||||||| |||||||||| Sbjct 288703 ACCACCACCCACCGAATCAAGAAAGAGCTCTCAATCTGTC 288742 >seq1937 Length=536218 Score = 89.7 bits (98), Expect = 8e-16 Identities = 54/57 (95%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 ||||| ||||||||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 146048 TCAGTTTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTACTGC 145992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796784631471