Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= AAMG01001634.1 Length=217 Score E Sequences producing significant alignments: (Bits) Value seq10669 129 7e-28 seq8230 129 7e-28 seq109 125 9e-27 seq17268 113 5e-23 seq9416 107 2e-21 >seq10669 Length=16854 Score = 129 bits (142), Expect = 7e-28 Identities = 93/106 (88%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | ||||||||| ||||||||||||| |||||||| Sbjct 13989 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCCATTATTCCATGCTCATGTATTCA 14047 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTC 111 ||| |||||||||||||||||||||||||| |||| ||||| ||| Sbjct 14048 AGCGAAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGTC 14093 Score = 123 bits (136), Expect = 3e-26 Identities = 93/107 (87%), Gaps = 2/107 (2%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | ||||||||| ||||||||||||| |||||||| Sbjct 3973 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCCATTATTCCATGCTCATGTATTCA 4031 Query 66 GGCGTAAGCCT-GCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTC 111 ||| |||||| |||||||||||||||||||| |||| ||||| ||| Sbjct 4032 AGCGAAAGCCTAGCTTTGAACACTCTAATTTTTTCAAAGTAAACGTC 4078 >seq8230 Length=28071 Score = 129 bits (142), Expect = 7e-28 Identities = 93/106 (88%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||||||| || | ||||||||| ||||||||||||| |||||||| Sbjct 27092 CTAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCCATTATTCCATGCTCATGTATTCA 27034 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTC 111 ||| |||||||||||||||||||||||||| |||| ||||| ||| Sbjct 27033 AGCGAAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGTC 26988 >seq109 Length=334349 Score = 125 bits (138), Expect = 9e-27 Identities = 92/106 (87%), Gaps = 1/106 (1%) Strand=Plus/Minus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 |||||||||||||||||| || | ||||||||| ||||||||||||| |||||||| Sbjct 219385 CTAGAAACCAACAAAATAAA-ACCAAAGTCCTATTCCATTATTCCATGCTCATGTATTCA 219327 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTC 111 ||| |||||||||||||||||||||||||| |||| ||||| ||| Sbjct 219326 AGCGAAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGTC 219281 >seq17268 Length=3537 Score = 113 bits (124), Expect = 5e-23 Identities = 91/106 (86%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 6 CTAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCG 65 ||||||||||||||| ||| || | ||||||||| ||||||||||||| |||||||| Sbjct 2454 CTAGAAACCAACAAA-TAGA-ACCAAAGTCCTATTCCATTATTCCATGCTCATGTATTCA 2511 Query 66 GGCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTC 111 ||| ||| |||||||||||||||||||||| |||| ||||| ||| Sbjct 2512 AGCGAAAG-CTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGTC 2556 >seq9416 Length=21965 Score = 107 bits (118), Expect = 2e-21 Identities = 88/105 (84%), Gaps = 4/105 (4%) Strand=Plus/Plus Query 7 TAGAAACCAACAAAATAGGGACGCACGTCCTATTCTATTATTCCATGCTAATGTATTCGG 66 |||||||||||||||||| || | ||||||||| |||||||||| || || ||| Sbjct 13725 TAGAAACCAACAAAATAGA-ACCAAAGTCCTATTCCATTATTCCATACTCAT---TTCAA 13780 Query 67 GCGTAAGCCTGCTTTGAACACTCTAATTTTCTCAAGGTAAAAGTC 111 ||| |||||||||||||||||||||||||| |||| ||||| ||| Sbjct 13781 GCGAAAGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGTC 13825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595079398344