Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydra_20vulgaris_20[refseq_20GCF_5F000004095.1_202009-10-30] 20,916 sequences; 852,170,992 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq10669 192 6e-47 seq8230 192 6e-47 seq109 187 3e-45 seq9416 154 2e-35 seq17268 127 2e-27 seq6964 93.3 4e-17 >seq10669 Length=16854 Score = 192 bits (212), Expect = 6e-47 Identities = 152/180 (84%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| || ||| |||||||| | || Sbjct 14093 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTCGCTTGAATACATGAGCA 14034 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||||| | ||||||||||||| |||||||||||||| |||||| Sbjct 14033 TGGAATAATGGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG-AAGTAATG 13976 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| | |||||| || ||||| |||||| ||||||||||||||||||| Sbjct 13975 ATTAAGAGGGACAAACGGGGGCATCTGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTT 13916 Score = 185 bits (204), Expect = 9e-45 Identities = 152/181 (84%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGC-AGGCCTTTGCTCGAATACATTACC 67 ||| ||||||||||||||||||||| ||||||||| |||| || ||| |||||||| | | Sbjct 4078 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCTAGGCTTTCGCTTGAATACATGAGC 4019 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| ||||||||| | ||||||||||||| |||||||||||||| ||||| Sbjct 4018 ATGGAATAATGGAATAGGACTTT-GGTTCTATTTTGTTGGTTTCTAGGACCGAA-GTAAT 3961 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 ||| || | ||| | |||||| || ||||| |||||| |||||||||||||||||| Sbjct 3960 GATTAAGAGGGACAAACGGGGGCATCTGTATTTCGTTGTCAGAGGTGAAATTCTTGGATT 3901 Query 188 T 188 | Sbjct 3900 T 3900 >seq8230 Length=28071 Score = 192 bits (212), Expect = 6e-47 Identities = 152/180 (84%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| || ||| |||||||| | || Sbjct 26988 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTCGCTTGAATACATGAGCA 27047 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||||| | ||||||||||||| |||||||||||||| |||||| Sbjct 27048 TGGAATAATGGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTAGGACCG-AAGTAATG 27105 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| | |||||| || ||||| |||||| ||||||||||||||||||| Sbjct 27106 ATTAAGAGGGACAAACGGGGGCATCTGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTT 27165 >seq109 Length=334349 Score = 187 bits (206), Expect = 3e-45 Identities = 151/180 (84%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| || ||| |||||||| | || Sbjct 219281 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTCGCTTGAATACATGAGCA 219340 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||||| | |||| |||||||| |||||||||||||| |||||| Sbjct 219341 TGGAATAATGGAATAGGAC-TTTGGTTTTATTTTGTTGGTTTCTAGGACCG-AAGTAATG 219398 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | ||| | |||||| || ||||| |||||| ||||||||||||||||||| Sbjct 219399 ATTAAGAGGGACAAACGGGGGCATCTGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTT 219458 >seq9416 Length=21965 Score = 154 bits (170), Expect = 2e-35 Identities = 144/180 (80%), Gaps = 5/180 (3%) Strand=Plus/Minus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| ||||||||||||| || ||| ||| || | | Sbjct 13825 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTTTCGCTTGAA---ATGAGTA 13769 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 ||||||||| ||||||||| | ||||||||||||| |||||||| ||| | |||||| Sbjct 13768 TGGAATAATGGAATAGGAC-TTTGGTTCTATTTTGTTGGTTTCTACGACTG-AAGTAATG 13711 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 || || | | | | ||||| || ||||| |||||| ||||||||||||||||||| Sbjct 13710 ATTAAGAGGTACAAATGGGGGCATCTGTATTTCGTTGTCAGAGGTGAAATTCTTGGATTT 13651 >seq17268 Length=3537 Score = 127 bits (140), Expect = 2e-27 Identities = 97/111 (87%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 9 GACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTCGAATACATTACCA 68 ||| ||||||||||||||||||||| |||||||||| || || ||| |||||||| | || Sbjct 2556 GACGTTTACTTTGAAAAAATTAGAGTGTTCAAAGCA-GCTTTCGCTTGAATACATGAGCA 2498 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCG 119 ||||||||| ||||||||| | ||||||| ||||| |||||||||||||| Sbjct 2497 TGGAATAATGGAATAGGAC-TTTGGTTCTA-TTTGTTGGTTTCTAGGACCG 2449 >seq6964 Length=36446 Score = 93.3 bits (102), Expect = 4e-17 Identities = 79/96 (82%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 93 GTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATAAATACGGATAGTCGGGGGTGT 152 |||||||||||| |||||||||||||| |||||||| || | ||| | |||||| | Sbjct 33687 GTTCTATTTTGTTGGTTTCTAGGACCGAA-GTAATGATTAAGAAGGACAAACGGGGGCAT 33745 Query 153 CAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTT 188 | ||||| |||||| ||||||||||||||||||| Sbjct 33746 CTGTATTTTGTTGTCAGAGGTGAAATTCTTGGATTT 33781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511896256640