Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq57421 91.5 9e-17 seq158401 87.8 1e-15 seq103951 77.0 2e-12 seq154342 75.2 7e-12 >seq57421 Length=2368 Score = 91.5 bits (100), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 41 CGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGG 100 |||| | ||||||||| |||| || ||||||||| ||||||||||| |||||||||||| Sbjct 1858 CGAAGGATCTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGG 1915 Query 101 CAGGGACGTAATACAACGCAAGCT 124 |||||||||||| |||| | |||| Sbjct 1916 CAGGGACGTAAT-CAACACGAGCT 1938 >seq158401 Length=12963 Score = 87.8 bits (96), Expect = 1e-15 Identities = 72/84 (86%), Gaps = 3/84 (4%) Strand=Plus/Minus Query 41 CGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGG 100 |||| | ||||||||| |||| || ||||||||| |||||||| || |||||||||||| Sbjct 761 CGAAGGATCTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGTGGTGTGTACAAAGGG 704 Query 101 CAGGGACGTAATACAACGCAAGCT 124 |||||||||||| |||| | |||| Sbjct 703 CAGGGACGTAAT-CAACACGAGCT 681 >seq103951 Length=1210 Score = 77.0 bits (84), Expect = 2e-12 Identities = 55/61 (90%), Gaps = 2/61 (3%) Strand=Plus/Plus Query 64 CATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGC 123 || ||||||||| ||||||||||| |||||||||||||||||||||||| |||| | ||| Sbjct 8 CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAAT-CAACACGAGC 65 Query 124 T 124 | Sbjct 66 T 66 >seq154342 Length=95412 Score = 75.2 bits (82), Expect = 7e-12 Identities = 57/65 (88%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 41 CGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGG 100 |||| | ||||||||| |||| || ||||||||| ||||||||||| |||||||||||| Sbjct 2209 CGAAGGATCTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGG 2266 Query 101 CAGGG 105 ||||| Sbjct 2267 CAGGG 2271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300268692260