Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq52247 327 4e-87 seq152678 100 9e-19 >seq52247 Length=4280 Score = 327 bits (362), Expect = 4e-87 Identities = 184/186 (99%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1954 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 2013 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2014 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 2073 Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCG 527 |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 2074 CGCGCTTGATTGAATTTCTTCACTTTGACATTCCGAGCACTGGGCAGAAATCACATTGCG 2133 Query 528 TCAACA 533 |||||| Sbjct 2134 TCAACA 2139 Score = 150 bits (166), Expect = 6e-34 Identities = 175/233 (75%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||||||||| ||| ||||||| ||| |||| | |||||||||| |||||||| Sbjct 1457 CTTTTGCTCTACGTGAGGTTTCTGTCCTCACTGAGCTCACCTTAGGACATCTGCGTTACC 1516 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||||||| ||||||||| |||||||||| ||||||| |||| ||| | |||| Sbjct 1517 GTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCCTCAGAGCAGATC 1576 Query 127 G---GCCCGCGAAG-GA--CCTTAACGCCAGAAAATGGT----CGGTGAAGACCAGTTCC 176 | | | ||||| || ||||| || ||||| || || | | || |||| Sbjct 1577 GCGAACGCACGAAGCGAACGCTTAATGCTAGAAAGCTGTACACCGAAGTACACTTCTTCC 1636 Query 177 GCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC 229 |||| | ||| |||||||| |||||| |||||||||||||| ||||||| Sbjct 1637 GCTTAACTGAGTAAGTAAAGAAACGACGGAAGTAGTGGTATTTCAATTGCGCC 1689 >seq152678 Length=4630 Score = 100 bits (110), Expect = 9e-19 Identities = 55/55 (100%), Gaps = 0/55 (0%) Strand=Plus/Minus Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 4630 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 4576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1632119168736