Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq992 248 4e-63 seq979 149 3e-33 seq21 147 9e-33 seq72 109 2e-21 >seq992 Length=2438 Score = 248 bits (274), Expect = 4e-63 Identities = 240/304 (79%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 382 GATGCTGGCGTAATGGTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACAT 441 ||||||||| || | || || || ||||||||| |||||||||||||||||||||||| Sbjct 1262 GATGCTGGCAAAAGGCTTTCAACCGACCCGTCTTGAAACACGGACCAAGGAGTCTAACAT 1203 Query 442 CTATGCGAGTGTTTGGGTGTCAAACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAA 500 ||||||||| |||||| |||||| || |||||| |||| ||| || ||||| Sbjct 1202 GTATGCGAGTTGGTGGGTGGAAAACCCATGAAGCGTAAGGAAACTGACTGG---TGGGAT 1146 Query 501 CCCGTGAGGGTGCACCATCGACCGATCCTGA-TGTCTTCGGATGGATTTGAGTAAGAGCA 559 | || | ||||||||||||||| | || | ||| | | || ||||||| ||||| Sbjct 1145 GGCCTGTGCCTGCACCATCGACCGACCATGCGTTTCTGCAAAAGG-TTTGAGTGCGAGCA 1087 Query 560 TAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAAC 619 || ||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 1086 TACACGTTGGGACCCGAAAGATGGTGAACTATGCCTGAGCAGGGTGAAGCCAGGTGAAAA 1027 Query 620 TCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||||||||||| || || ||| ||||||||||| | || | |||||||||||| Sbjct 1026 CCTGGTGGAGGCTCGTAGATGTGCTGACGTGCAAATCGCTTTTCGGACTTGGGTATAGGG 967 Query 680 GCGA 683 |||| Sbjct 966 GCGA 963 Score = 185 bits (204), Expect = 4e-44 Identities = 143/170 (84%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34 TTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAG 93 ||| | |||||| |||| ||||||||||||| | || | || ||||||| | ||||| | Sbjct 1605 TTCAAAGAGTCGGGTTGCTTGGGAATGCAGCCCAAATTTGGTGGTAAATCCCATCTAAGG 1546 Query 94 CTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACT 153 |||||||||||| |||||||||||||| ||||||| |||| ||||||||||||| ||| Sbjct 1545 CTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGAACT 1486 Query 154 TTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTG 203 ||| |||||||||||||||| | |||||||||||| |||||||| ||| Sbjct 1485 TTGAAAAGAGAGTTAAAAAGTGCTTGAAATTGTTGAGGGGGAAGCGTTTG 1436 >seq979 Length=2555 Score = 149 bits (164), Expect = 3e-33 Identities = 114/135 (84%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||| |||||||||||||||||||||||||||| |||| |||| Sbjct 151 GAGCACGAGCGTACGCGTTAGGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAG 210 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| | Sbjct 211 CCAGAGGAAACTCTGGTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACC 270 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 271 TGGGTATAGGGGCGA 285 >seq21 Length=757752 Score = 147 bits (162), Expect = 9e-33 Identities = 104/119 (87%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 |||| ||||||||||||||||||||||||||| ||| ||||||||| ||||||||||| Sbjct 136311 GTTGAGACCCGAAAGATGGTGAACTATGCCTGGGCAGGATGAAGCCAGGGGAAACTCTGG 136252 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||||| || |||| ||||| ||||||||||||||||| | ||||||||||||||| Sbjct 136251 TGGAGGTCCGTAGCGATTCTGACGTGCAAATCGATCGTCTGACCTGGGTATAGGGGCGA 136193 >seq72 Length=376384 Score = 109 bits (120), Expect = 2e-21 Identities = 83/98 (85%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 ||| ||||||||||||||||||||||| | | | ||| ||||||||| |||||||||||| Sbjct 59027 TTGAGACCCGAAAGATGGTGAACTATGTCGGGACAGGATGAAGCCAGGGGAAACTCTGGT 58968 Query 626 GGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTC 663 ||||| || |||| ||||| || |||||| |||| || Sbjct 58967 GGAGGTCCGTAGCGATTCTGACGCGCAAATTGATCATC 58930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079969519550