Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq730 419 7e-115 seq796 141 3e-31 >seq730 Length=6546 Score = 419 bits (464), Expect = 7e-115 Identities = 391/484 (81%), Gaps = 16/484 (3%) Strand=Plus/Plus Query 23 AAAGGAA---TTGACGGGGACCCGCACAAGCGGTGGAGCATGT-GGTTTAATTCGAAGCA 78 ||||||| | |||||| |||||||||||||||||| |||| || ||||||||| ||| Sbjct 5799 AAAGGAAAATTAGACGGGAACCCGCACAAGCGGTGGATGATGTAGGATTAATTCGATGCA 5858 Query 79 AC-GCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGA-GATAG-AGGTTT 135 || ||||| |||||||||| | |||||||| || || | ||| ||| | ||| | Sbjct 5859 ACCGCGAAAAACCTTACCATACCTTGACATGTCAGGAACCTCCGAGAAGATTGGAGGGTG 5918 Query 136 CCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGAT 195 ||| ||| | || ||||||| ||||||| ||||||||||||||||||||||| Sbjct 5919 CCCGAAAGGGAACCTGAAC-ACAGGTGCTGCATGGCCGTCGTCAGCTCGTGTCGTGAGAT 5977 Query 196 GTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGG 255 ||||||||||||||||||||||||||||||||| |||||||| | | || ||| Sbjct 5978 GTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTCATTAGTTGCTACGA--AA---GGG 6032 Query 256 CACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAAT-CATC 314 |||||||| ||||||||||||||||||||||||||||||||| |||||||| | | || Sbjct 6033 CACTCTAATGAGACTGCCGGTGACAAACCGGAGGAAGGTGGGGATGACGTCAAGTCCTTC 6092 Query 315 ATGCCCCTTATGATTTGGGCTAC-ACACGTGCTACAATGGACAATACAAAGGGCAGCGAA 373 ||| |||||||| | ||||| | |||||| |||||||| ||||| ||||| || || Sbjct 6093 ATGGCCCTTATGGGTAGGGCTTCAACACGTCATACAATGGTACATACAGAGGGCCGCCAA 6152 Query 374 ACCGCGAGGTCAAGCAAATCCCATAAAGT-TGTTCTCAGTTCGGATTGTAGTCTGCAACT 432 |||||||| ||| ||||||| ||||| | ||| ||| ||||||||||||||||||| Sbjct 6153 CCCGCGAGGGGGAGCTAATCCCAGAAAGTGTATTCGTAGTCCGGATTGTAGTCTGCAACT 6212 Query 433 CGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTT 492 |||||| |||||| |||||||||||||||||| |||||||||| ||||||||||||| Sbjct 6213 CGACTACATGAAGTTGGAATCGCTAGTAATCGCGGATCAGCATGTCGCGGTGAATACGTT 6272 Query 493 CCCG 496 |||| Sbjct 6273 CCCG 6276 Score = 345 bits (382), Expect = 1e-92 Identities = 389/504 (77%), Gaps = 24/504 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 ||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 158 TACGATCGCAAGATTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 217 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| | |||||| |||| ||| ||| | | |||||| | Sbjct 218 GTGGTTTAATTCGATGATACGCGAGGAACT----CAAGGCTTTAATGCGACTGACCGATT 273 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | ||| ||| ||| ||||| | ||||| ||||||||||||||||| Sbjct 274 TGGAAACAGATCTTT-----TCGCAAGACAGTTTACAAGGTGCTGCATGGTTGTCGTCAG 328 Query 181 CTCGTGTCGTGAGATGTT-GGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTG 239 |||||| |||||| ||| ||||||||||| |||||||||||||| | ||||||| Sbjct 329 CTCGTG-CGTGAGGTGTCAGGGTTAAGTCCTATAACGAGCGCAACCCCTGTTGTTAGTTG 387 Query 240 CCATC-ATTAA-GTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGG 297 ||| | | || || ||| ||||||| ||||||| ||| ||| |||||||||||| Sbjct 388 CCAGCGAGTAGTGTCGGGAACTCTAACAAGACTGCCAGTG-CAACTGTGAGGAAGGTGGG 446 Query 298 GACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAA 357 | ||||||||||||||| | ||||| | |||||||||||||||||| |||||| | Sbjct 447 -ATGACGTCAAATCATCACGGGCCTTACGCCTTGGGCTACACACGTGCT-CAATGGCCGG 504 Query 358 TACAAAGGGCAGCGAAACCGCGAGGTCA--AGCAAATCCCATAAAGTTGTTCTCAGTTCG 415 |||| || ||||| || | | | || ||| ||| | |||||| | || ||||||| Sbjct 505 TACAGAGAGCAGC--CACTGGGTGACCAGGAGCGAAT-CTATAAAGCCGGTCACAGTTCG 561 Query 416 GAT-TGTAGTCTGCAACTCGACT-ATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG- 472 ||| | |||||||||||||||| ||| ||||||||||||||||||| | ||||| Sbjct 562 GATCGGGAGTCTGCAACTCGACTCCCGTGAGACTGGAATCGCTAGTAATCGGATATCAGC 621 Query 473 CATGCTACGGTGAATACGTTCCCG 496 |||| | ||||||||||||||||| Sbjct 622 CATGATCCGGTGAATACGTTCCCG 645 >seq796 Length=4978 Score = 141 bits (156), Expect = 3e-31 Identities = 284/387 (73%), Gaps = 48/387 (12%) Strand=Plus/Minus Query 152 AGTGACAGGTGATGCATGGTTGT-CGTCAG---CTCGTGTCGT-GAGAT--GTTGGGTTA 204 ||||| ||||| ||||||| ||| ||| | ||||||| || || || ||||||||| Sbjct 4884 AGTGAGAGGTGCTGCATGGCTGTTCGTTCGAGGCTCGTGTTGTTGAAATTTGTTGGGTTA 4825 Query 205 AGTCC---CGCAACG-AGCGCAA----CCCTTAAGC--TTAGTTGCCATCATTAAGTTGG 254 ||| | |||| || ||||||| | || || | | ||||||| ||||||||||| Sbjct 4824 AGTTCTGTCGCACCGGAGCGCAAAGCCCGCTGAATCGGTCTGTTGCCAGCATTAAGTTGG 4765 Query 255 GCACTCT--AAGTTGACTGCC-GGTGACAAACCGGAGG-AAGGTGGGGACGACGT--CAA 308 ||||| | | | ||||||| || | |||||||||| ||||| || | ||||| | | Sbjct 4764 GCACTATGCACGAGGACTGCCTGGAGTTAAACCGGAGGGAAGGTAGG-ATGACGTTCCTA 4706 Query 309 ATCATCATGCCCCTTATGATTTGGGCTACACACGTGCT-AC-AATGGACAATACAA-AGG 365 || || | |||||||| | ||||||| ||||| | || ||||| | ||| ||| Sbjct 4705 GTC-TCTGGGCCCTTATGTCTAGGGCTAC-CACGTAATGACTAATGGGCG-TACTGGAGG 4649 Query 366 GCA-GCGAAACCG-CGAGGTCA---AGCAAATCCCATAAA----GTTGTTCTCAGTTCGG 416 ||| |||| || || || | |||||||| || ||| | ||| |||||| ||| Sbjct 4648 GCAAGCGATACGTTCGCGGCCTGGGAGCAAATCTCAAAAAAAGCGCTGTACTCAGT-CGG 4590 Query 417 AT-TGTA-GTCTGCAACTC-GACTATATGAAGCT--GGAATCGCTAGTAATCGTAGATCA 471 || || | ||||||||||| |||| |||||| | ||||||||||||||||| |||||| Sbjct 4589 ATGTGGATGTCTGCAACTCTGACTCCATGAAGGTTTGGAATCGCTAGTAATCGGAGATCA 4530 Query 472 G-CATGCTACGGTGAATACG--TTCCC 495 | || ||| ||||||||||| ||||| Sbjct 4529 GCCACGCTCCGGTGAATACGGTTTCCC 4503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503978628160