Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq730 170 7e-40 seq796 107 7e-21 >seq730 Length=6546 Score = 170 bits (188), Expect = 7e-40 Identities = 329/460 (72%), Gaps = 44/460 (10%) Strand=Plus/Minus Query 141 CACCTAAATGCATTTCGGGGAGAACCAGCTA-TCACGAAG--TTTGATTGGCCTTTCACC 197 ||||||||||||||| |||||| || ||||| | |||||| |||||||||||||||||| Sbjct 2169 CACCTAAATGCATTTAGGGGAGTACGAGCTATTTACGAAGTTTTTGATTGGCCTTTCACC 2110 Query 198 CCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTC 257 |||| ||| ||||||| || | ||||||| | | ||||||||||||||| ||| Sbjct 2109 CCTACCCA-AGGTCAT-CCGAGAACTTTCAACGTCAACCGGTTCGGTCCTCCAC-TGGTG 2053 Query 258 TTACCCGCGCTTCA---ACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTG 314 || || |||||| ||||| |||||| |||||| | || |||| ||| | | || Sbjct 2052 TTTACCCAGCTTCAATCACCTG-CCATGG-TAGATC-CAACGTTTCGCGTC-TAACACTG 1997 Query 315 CC-ACTCATACGCCCTA-TTCGGA--CTCGC-TTTCGC-TACGGCTAC----CCCACACG 364 || ||| | | |||| ||| || |||| |||||| | ||| | | | | || Sbjct 1996 CCGACTAAAGCCGCCTAGTTCAGAACATCGCTTTTCGCGTGCGGATCCATGGCTTAAAC- 1938 Query 365 GGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCAC 424 ||| ||| | ||||| |||||| ||||||| | | |||||||||||||||| | Sbjct 1937 -ATTATCCTTGGCCGGCAACGTTAACTCGTAGGCTCA-TATGCAAAAGGCACGCCGTCCC 1880 Query 425 CTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAG--GCACATGGTTTCAGGTACT 482 || ||||| ||| |||| | |||||| || ||||| |||||| || Sbjct 1879 CTCCCCACTAAAGGGC---------TCGACCGCTTGTAGAAGCGCATGGGTTCAGGATCT 1829 Query 483 ATTTCACTC--CCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATC 540 ||||| ||| | || || | | ||||||||| ||||||||||| || | ||||| Sbjct 1828 ATTTC-CTCGTTACTTCACGGTTCTTCTTCACCTTT--CTCACGGTACTGGTTCACTATC 1772 Query 541 GGTCACCAAGGAGTATTTAGGCTTAA--CGGGTGGTCCCG 578 |||| | |||||||||||| ||||| || |||||||| Sbjct 1771 GGTCTCTCAGGAGTATTTAGCCTTAAGCTGGATGGTCCCG 1732 >seq796 Length=4978 Score = 107 bits (118), Expect = 7e-21 Identities = 412/592 (70%), Gaps = 75/592 (13%) Strand=Plus/Plus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCT-TGTG-GGCCCCCTAGACCAT--CCAGT 108 || |||||||||||| | || |||||||| | | | ||| ||| |||| |||| Sbjct 3138 GGTATTCGGAGTTTGAATAGGTTTGGTAAGCTACGCGTGACCCTCTA-TCCATAGTCAGT 3196 Query 109 GCTCTACCTCCGGGAAGAAACACGCG-ACGCTGCACCTAAAT-GCATTTCGGGGAGAACC 166 ||| |||| || ||| | || | |||| |||||||| | |||||| ||||||| Sbjct 3197 GCTGTACCCCC--GAAAATACGTTAGAACGCATGACCTAAATAGATTTTCGGAGAGAACC 3254 Query 167 AGCTATCACGAAGTTTG-ATTGGCCTTTCAC-CCCT-ATCCACAGGTCATCCCCTCAGTT 223 ||||| ||||||||| ||| ||||||||| |||| ||||||| ||||| ||| |||| Sbjct 3255 -GCTATTCCGAAGTTTGTATTAGCCTTTCACTCCCTAATCCACA-GTCAT-CCCAAAGTT 3311 Query 224 TTCAACC-TAAGTGGGTTCGGTCC----TCC---ACGCGGTCTTACCC-GCGCTTCAA-- 272 | |||| | | | ||||||||| ||| ||| || |||||| |||||||| Sbjct 3312 T--AACCTTCAAAGAGTTCGGTCCCAGGTCCAATACGAAGTTTTACCCTCCGCTTCAAAA 3369 Query 273 --CCTGCC----CATGGATAG--ATCACTTCGCTTCGGG-TCTTGA--TCGTGCC-ACTC 320 |||||| ||| ||||| ||| || |||||| ||| | |||| ||| Sbjct 3370 AGCCTGCCGCAACAT-GATAGCAGTCATCCCGTTTCGGGCTCTACAAGCACTGCCGACTT 3428 Query 321 ATACGCCCTA-TTC-GGACTCGCTTTCGCTACGGCTAC-CCCAC---ACGGGTTAACCTC 374 | |||||||| ||| | ||||| |||| |||||||||| ||| | |||| ||||||| Sbjct 3429 A-ACGCCCTACTTCAGTACTCGGTTTCCCTACGGCTACACCCTCGCAACGGCTTAACCT- 3486 Query 375 GCGACACA-ACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCT 433 || ||| | | |||||||| | ||| | ||||||| ||||| | || | | Sbjct 3487 GCCACATAGCCATAAACTCGCTGAATCA-AATGCAAAAGG--TTACGTCATCAGG--CTT 3541 Query 434 AAAAGGCACTTCAGCTCC-GACGGATTGTAGGCACATGGTTTCAGGTA--CTATTTCACT 490 || || | |||| ||| | ||||| ||| | ||||||| | |||||||||| Sbjct 3542 TAA---CAATAGCCCTCCTGACTGTTTGTAAGCATACGGTTTCAAAAAATCTATTTCACT 3598 Query 491 CC-CCGCCA--GGGGTACTT--TTCACCTTTCCCTCACGG--TACTTG-TCCGCTATCGG 542 || || | | ||||| ||| |||||| ||||||| | | |||| | ||| ||| ||| Sbjct 3599 CCGCCTCTATCGGGGTTCTTTCTTCACC-TTCCCTCGCCGTTTACTAGCTCCACTA-CGG 3656 Query 543 T--CACCAAGG-AGTATTT-AGGCTTAACGGGTGGTCCCGCCAGATTCACAC 590 | | |||| ||||||| |||| |||||||||| |||| |||| || Sbjct 3657 TGGTAGTAAGGTAGTATTTGTAGCTTGGAGGGTGGTCCCCCCAGTTTCAAAC 3708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817574171904