Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq730 118 3e-24 seq796 98.7 2e-18 >seq730 Length=6546 Score = 118 bits (130), Expect = 3e-24 Identities = 306/434 (71%), Gaps = 52/434 (12%) Strand=Plus/Minus Query 13 AGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTTACCC 72 ||||||| ||| |||||| ||||| | ||||||||||||||| | || |||||| Sbjct 2101 AGGTCAT-CCGAGAACTTT--CAACGTCAACCGGTTCGGTCCTCCACTG-GTGTTTACCC 2046 Query 73 AACCTTTCAA---CCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC- 128 | | ||||| |||||| | | |||||| || ||||| ||||| | | || Sbjct 2045 AGC--TTCAATCACCTGCC---ATGGTAGATCCAACG--TTTCGCGTCTAA--CACTGCC 1995 Query 129 GACTAGACGC-CCTAGTA-AGAC--TCGCTTTTCGC-TACGCCTCC----CCTATTCGGT 179 ||||| | | |||||| ||| ||||||||||| | || ||| | || | | Sbjct 1994 GACTAAAGCCGCCTAGTTCAGAACATCGCTTTTCGCGTGCGGATCCATGGCTTAAACA-T 1936 Query 180 TAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACC-- 237 || ||| ||| | ||| ||| | | ||| || ||||||| |||| ||| || Sbjct 1935 TATCCTTGGCCGGCAACGTTAACTCGTAGGCTCAT-ATGCAAAAGGCACGCCGTCCCCTC 1877 Query 238 -CAACAAAGTGGGCTCCCACTGCTTGTA----CGCATACGGTTTCAGGATCTATTTCACT 292 | || || |||||| || ||||||| ||||| || ||||||||||||||| || Sbjct 1876 CCCACTAAA-GGGCTCG-ACCGCTTGTAGAAGCGCAT--GGGTTCAGGATCTATTTC-CT 1822 Query 293 CCCCTCTCCGGGGTTCTT-TTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTC 351 | || | ||||||| ||| |||||| |||||||||| |||||||||||||| || Sbjct 1821 CGTTACTTCACGGTTCTTCTTCACCTTTC--TCACGGTACTGGTTCACTATCGGTCTCTC 1764 Query 352 AGTAGTATTTAGCCTT--GGAGGATGGTCCC--CCCATATTC-AGACAA-AGTTTC--TC 403 || ||||||||||||| | |||||||||| || | ||| |||||| ||||| || Sbjct 1763 AGGAGTATTTAGCCTTAAGCTGGATGGTCCCGGCCGAATTTCTAGACAAGGGTTTCCATC 1704 Query 404 GTG-CTCCGTCCTA 416 ||| ||||| |||| Sbjct 1703 GTGCCTCCGCCCTA 1690 >seq796 Length=4978 Score = 98.7 bits (108), Expect = 2e-18 Identities = 141/182 (77%), Gaps = 20/182 (11%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGA--TCTATTTCACTCC-CCTCTC-CGGGGTTCTT 310 |||| ||||| ||||||||||||| | ||||||||||||| ||||| |||||||||| Sbjct 3559 ACTGTTTGTAAGCATACGGTTTCAAAAAATCTATTTCACTCCGCCTCTATCGGGGTTCTT 3618 Query 311 T--TCGCCTTTCCCTCACGGT--ACTAGTTC-ACTATCGGTC--AGTCAG-TAGTATTT- 361 | || |||| ||||| | || ||||| || |||| |||| ||| || |||||||| Sbjct 3619 TCTTCACCTT-CCCTCGCCGTTTACTAGCTCCACTA-CGGTGGTAGTAAGGTAGTATTTG 3676 Query 362 -AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTT--CTCGTGCTCCG-TCCTAC 417 ||| ||||||| ||||||||||| |||| ||| |||| ||||| ||| | |||| Sbjct 3677 TAGC-TTGGAGGGTGGTCCCCCCAGTTTCAAACAGGGTTTTCAACGTGCCCCGATTCTAC 3735 Query 418 TC 419 || Sbjct 3736 TC 3737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241582356864