Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq730 82.4 7e-14 seq796 77.0 3e-12 >seq730 Length=6546 Score = 82.4 bits (90), Expect = 7e-14 Identities = 87/108 (81%), Gaps = 5/108 (5%) Strand=Plus/Minus Query 25 TTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCG-CACCTG 83 |||||||||||||||||||| | ||||||||||||||||| | || |||||| ||||| Sbjct 3759 TTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGCTCTACTTTCGTAACCTG 3700 Query 84 CT-CGAGCCGT-CACTCTCGCA-GTC-AAGCCAGCTTATGCCATTGCA 127 | ||| | || | |||| || ||| |||| |||||||||||||| Sbjct 3699 ATCCGACCTGTACTGTCTCTCACGTCAAAGCTCCCTTATGCCATTGCA 3652 >seq796 Length=4978 Score = 77.0 bits (84), Expect = 3e-12 Identities = 121/164 (74%), Gaps = 11/164 (7%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCC-ATTCAG--AAC-CACCGGATCACTATGAC-CTGCTTTCGC 78 ||||||||||||||||||| | || | ||| ||||||||||||| | | | |||||| Sbjct 1498 GTTGAGCGATGGCCCTTCCAACTCGGCAAACTCACCGGATCACTAAGCCGCGACTTTCGT 1557 Query 79 ACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTT-ATGCCATTGCACTAACCTCAC 137 ||||||||| || |||||||||||||| ||| |||| || |||| || | Sbjct 1558 TCCTGCTCGACGTGTTTGTCTCGCAGTCAAGCTCCCTTAATGCGTTTACACTCCTTTCGC 1617 Query 138 --GATGTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||| ||| || || | || |||||||| || ||||||||| Sbjct 1618 CGGATTTCCAAC--TGCTCAGAGGACCTTCG-GCGCCTCCGTTA 1658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473593480452