Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq730 154 3e-35 >seq730 Length=6546 Score = 154 bits (170), Expect = 3e-35 Identities = 212/285 (74%), Gaps = 20/285 (7%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACG- 59 ||||||||||||| ||||||||| ||||||||| || ||||| || | ||| Sbjct 5391 GGCTGCTGGCACGTAGTTAGCCGGTGCTTATTCTTACGGTACCG------TCGTAGACGA 5338 Query 60 --TGGAA--GGTTTTATTCCCTTATA-AAAGAAGTTTACAATCCGTAGAACCTTCATCCT 114 | || | ||| ||||| || | ||||| ||||||| ||| || ||||| || Sbjct 5337 TTTAGAGCCGCGTTTCTTCCCGTACACAAAGAGCTTTACAA-CCGAAGG-CCTTC-TCAC 5281 Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||||| |||| | | |||||| |||| ||||| |||||||||||| Sbjct 5280 TCACGCGGCATTGCTGGATCAGGTTGCC--CCATTGTCCAAAATTCC-CACTGCTGCCTC 5224 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| |||||||||||||||||||| ||||| | | |||||||||| | || Sbjct 5223 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCGTCCTCTCAGACCAGCT 5164 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 | | ||||| | || |||| | | ||||| | || |||| ||||| Sbjct 5163 A-CGATCGTCGCCTTGGTGAG-CTTTACCTCACCAACTAGCTAAT 5121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068784812352