Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq384 170 6e-40 seq169 167 7e-39 seq1072 141 3e-31 seq21 132 1e-28 >seq384 Length=49765 Score = 170 bits (188), Expect = 6e-40 Identities = 140/163 (86%), Gaps = 8/163 (5%) Strand=Plus/Minus Query 345 CATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACG 404 ||||||||||||||||||||||||| |||||||||||| | |||| ||| || ||| Sbjct 363 CATGTATTAGCTCTAGAATTACCACAGTTATCCATGTA-AACTGTACGATC-TATGAACC 306 Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCAC--TGTATAGATTGCTTATACTTAGACA 462 ||||||||||||||||||||||||| ||||| | ||| || | || |||| ||||| Sbjct 305 ATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTTGT-TAAA--GCAAGTACTGAGACA 249 Query 463 TGCATGGCTT-AATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||||||||||||||||||||||||| Sbjct 248 TGCATGGCTTAAATCTTTGAGACAAGCATATGACTACTGGCAG 206 >seq169 Length=189464 Score = 167 bits (184), Expect = 7e-39 Identities = 344/475 (72%), Gaps = 39/475 (8%) Strand=Plus/Plus Query 43 TATTTATTGTCACT-ACCTCCCCGTGTCG--GGATTGGGTAATTTGCGCGCCTGCTGCCT 99 ||||| | |||||| |||||||| | | ||| ||| ||||||||||||||||||||| Sbjct 2 TATTTTTCGTCACTTACCTCCCCTTCCAGCCGGAGTGG-TAATTTGCGCGCCTGCTGCCT 60 Query 100 T--CCTTGGATGTGGTAGC-CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC-TAATTC 155 | ||| | |||||| ||| ||||| |||| ||||||||||| ||| ||| | | | Sbjct 61 TTTCCTGGTATGTGG-AGCACGTTTTTCAG-CTCCCTCTCCGTGGTCGGGCCCCTGACAC 118 Query 156 CCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAG 215 |||| |||||| | || || |||| || || | || | ||| ||||| | ||| Sbjct 119 TCCGT-ACCCGTAAAAGCCTTGTTAGGAACATAACCAAACAAC--AAGCTGATAAGTCAG 175 Query 216 AAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA 275 | | | ||| ||| | ||||| | || |||||| | || | |||||| || ||| Sbjct 176 ACACT-GAA-GAATCTGCGCCGTA-CGAGATCATGCGCTCCGCTTCGTTATTCAGAGTCA 232 Query 276 CCAAG-GAGC--CCCGAAGGGCGTTGGTTTTTTATCTAATAAATACACCCCTTCCGAAGT 332 |||| || | ||||| || || | | | | | ||||| | |||| ||| | Sbjct 233 CCAATTGACCGACCCGA-GGCCG--GATGTCCTGGCAAATAACTGG--CCCTCACGAGGG 287 Query 333 --CGGGGTTTTTAGCATGT-ATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT 389 ||| | || | |||| |||||||| |||||| |||| |||||||||||| | || Sbjct 288 AACGGACTGGTTTG-ATGTTATTAGCTC-AGAATT-CCACAGTTATCCATGTAA-ACTGT 343 Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCAC--TGTATAGATT 447 || ||| | | ||| ||||||||||||||||||||||||| ||||| | ||| || | Sbjct 344 ACGATCTAGTGAACCATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTTGT-TAAA-- 400 Query 448 GCTTATACTTAGACATGCATGGCTTAATCTTTGAG-ACAAGC-ATATGACTACTG 500 || |||| ||||||||||||||||||||||||| |||||| |||| ||||||| Sbjct 401 GCAAGTACTGAGACATGCATGGCTTAATCTTTGAGAACAAGCAATAT-ACTACTG 454 >seq1072 Length=1867 Score = 141 bits (156), Expect = 3e-31 Identities = 145/197 (74%), Gaps = 32/197 (16%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 198 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 139 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTC-------------------- 101 |||| ||||||| ||||||||||||||||||||||||||| Sbjct 138 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGTGGGTAATTTGCGCGC 79 Query 102 -----------CTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT 150 |||||||| ||||||||||||||||||||||||||||| ||| |||| Sbjct 78 CTGCTGCCTTCCTTGGATGGGGTAGCCGTTTCTCAGGCTCCCTCTCCGGTGTCGGGCCCT 19 Query 151 AATTCCCCGTTACCCGT 167 | | ||||||||||| Sbjct 18 GACACTCCGTTACCCGT 2 >seq21 Length=757752 Score = 132 bits (146), Expect = 1e-28 Identities = 126/155 (81%), Gaps = 11/155 (7%) Strand=Plus/Plus Query 354 GCTCTAGAATTACCACGGTTATCCATGTAGTAAG--GTACTATCAAATAAACGATAACTG 411 |||||||||||||||| || ||||||| |||| |||| ||| | | ||| ||||||| Sbjct 130918 GCTCTAGAATTACCACAGT-ATCCATGC-GTAAACTGTACGATCTAGTGAACCATAACTG 130975 Query 412 ATTT--AATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGG 469 |||| |||||||||||||| ||| | ||| || | |||| |||||||||||| Sbjct 130976 ATTTTAAATGAGCCATTCGCGGTTCCCTTGTTAAGCAAG----TACTGAGACATGCATGG 131031 Query 470 CTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||| |||||||||||||||||||| Sbjct 131032 CTTAATCTTTGAGA-AAGCATATGACTACTGGCAG 131065 Score = 77.0 bits (84), Expect = 1e-11 Identities = 98/126 (78%), Gaps = 7/126 (6%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATT-GTC-ACTACCT 60 || |||||| ||||| ||| | |||| | | | ||| |||| || ||| ||||||| Sbjct 130553 ACCCATTCCGATTACGAGAAGCTAAAGCTCTC-GCATCTTTATTCTTTCGTCCACTACCT 130611 Query 61 CCCCGTGTCGGGATTGGGTAAT-TTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| || | ||| |||||||| |||||||||||||||||||||| ||| | ||||| | Sbjct 130612 CCCGCTG-CCGGAGTGGGTAATATTGCGCGCCTGCTGCCTTCCTT-GATTGGTTAGCC-T 130668 Query 120 TTCTCA 125 |||||| Sbjct 130669 TTCTCA 130674 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510378537216