Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq6 136 3e-27 seq36 131 1e-25 seq98 104 2e-17 >seq6 Length=1030571 Score = 136 bits (150), Expect = 3e-27 Identities = 155/208 (75%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 66263 TCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCA 66322 || ||||| || |||| || | |||| || || ||||||||||| |||| || | Sbjct 233282 TCGCCCCAGACATCGGCCAAGCCGGGACTCTCATGCGGACACATCAGGCACCAGTCCTCG 233223 Query 66323 TCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGT 66382 || || || |||||||| || ||||| || | |||||| |||||||| | ||| || Sbjct 233222 GACTTCTCCACCCGACGCATGAAGAGATCCGGCACCCAGAGAGCGTAGAACAAATCACGA 233163 Query 66383 GCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCA 66442 || || |||||||| | |||| ||| ||||||| || ||||| ||||| | ||||| Sbjct 233162 GCACGCTGCTCCTCTACGCCGGTATTCTTGCGCAGATCCAGGAAGTCAAAAACATCGGCG 233103 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACG 66470 ||||| || || |||||||| ||||||| Sbjct 233102 TGCCACGGCTCTAGGTAGATTGCGAACG 233075 Score = 82.4 bits (90), Expect = 6e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 65078 TCGACCGTGAACTGGATCGCATTAGCAGCCGCCTTGGTCCTAAGATAGTACATGCCGGTC 65137 ||||| |||||||| || || |||||||||| |||||| | ||||||||||| |||||| Sbjct 235161 TCGACGGTGAACTGAATGGCGTTAGCAGCCGGCTTGGTGCGGAGATAGTACATACCGGTC 235102 Query 65138 TTGAGGCC 65145 |||||||| Sbjct 235101 TTGAGGCC 235094 >seq36 Length=576097 Score = 131 bits (144), Expect = 1e-25 Identities = 150/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 61397 TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATT 61456 ||||||| || ||||||||||| || ||||| | |||||| |||||||| || | Sbjct 83529 TGTTCAACGCAATCGAGACGATGCCCAGTGTGAAACAGAAAGCCGATTGGGCGCTCCGGT 83588 Query 61457 GGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGG 61516 ||||| ||||| || | ||||| ||| || | | || || || | ||| |||| Sbjct 83589 GGATCTCCAGTGAGTTGGTGTCGTTTGGAGAAAGAATCGTCGCGTTCGCAGCGGTGGAGG 83648 Query 61517 GTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGC 61576 | | || || || || || ||||| |||| |||||||||||||||||||| |||||| Sbjct 83649 GGATTTTCTTTAGCGGGTCATTTGCATCAATATTTTGGTTGAAGAAACGTGGCATTATGC 83708 Query 61577 CCGGTCTGACCTTCAGCAATGA 61598 | ||||| |||||||| ||||| Sbjct 83709 CGGGTCTTACCTTCAGTAATGA 83730 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 61258 GAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATT 61317 || || ||| | ||||| || || | |||| || | || |||||||| |||||||| Sbjct 83159 GAGCGATTCTCTCAGGAAGTTCAGATACCGGAAGCCAGGTGCTTCTACGGATTCCAGATC 83218 Query 61318 GCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 || ||||| ||| |||| |||||||||||||| | || || ||||| ||||| Sbjct 83219 GCTATGGAAAATATCCATTCGGAGATGTACAGCCTGCTGATTGATACCTACAT 83271 >seq98 Length=303023 Score = 104 bits (114), Expect = 2e-17 Identities = 134/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 61434 GAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATT 61493 |||||| || ||||| ||| ||||| | ||| || | || || | ||| ||||| | Sbjct 281323 GAAAGCCGACTGGGCACTCAGCTGGATGAGCAGCACCAACGCCACCTATGGAGAACGCAT 281382 Query 61494 GCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTG 61553 |||| ||||| ||| ||||| | || ||||| || || || ||| | ||||| || Sbjct 281383 CGTGGCCTTTGCCTCGGTGGAGGGGATCTTCTTCAGCGGCTCATTCGCCTCCATCTTCTG 281442 Query 61554 GTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGA 61613 | | || ||||| ||||| |||||||| |||| |||||||||||| | || ||||| Sbjct 281443 GCTCAAAAAACGGGGACTCATGCCCGGCTTGACATTCAGCAATGAGCTCATCAGTCGCGA 281502 Query 61614 CGAGG 61618 |||| Sbjct 281503 TGAGG 281507 Score = 87.8 bits (96), Expect = 1e-12 Identities = 81/103 (79%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||| ||||| || |||| ||||| | |||||||| ||||| || ||||| || || Sbjct 281078 CAGGAAGTGCAGGTCACGGAAGCGCGCTTCTTCTACGGATTCCAAATCGCCATCGAAAAC 281137 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 |||| |||||||||||||| | || ||||| || ||||||| Sbjct 281138 ATCCATTCGGAGATGTACAGCCTCCTGATCGACACCTACATCA 281180 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397561114743440