Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1 170 3e-40 seq2099 80.6 4e-13 >seq1 Length=3519 Score = 170 bits (188), Expect = 3e-40 Identities = 173/219 (79%), Gaps = 5/219 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| |||||| ||||||||||||||| ||||||| | Sbjct 430 GTACAAAGGGCAGGGACGTATTCAACACGAGCTA-ATGACTCGCGCTTACAAGGAATT-C 373 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| | | | | || || | | ||||||||||||| | || || || | ||| Sbjct 372 CTCGTTCATGTGCGT-AGTTACATCGCACAATCCCCATCACGAAGGAAGTTAAACGGATT 314 Query 120 ACCCGGACCTGTCGGCCAAGGTGA-TAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 | | ||| |||| || || | || || || ||| | | |||||||||||||||||| Sbjct 313 TCTCATTCCTCTCGGAAAAAGTAAGTATACCCGATGACTCCTTCAGTGTAGCGCGCGTGC 254 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 253 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 215 >seq2099 Length=53888 Score = 80.6 bits (88), Expect = 4e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||| ||||| | ||||| ||||||||| ||||| ||| Sbjct 16287 GTACAAAGGGCAGGGACGTATTCAACACGAGC-TAATGACCCGCGCTTACAAGGAA-TTC 16344 Query 61 CTCGTT 66 |||||| Sbjct 16345 CTCGTT 16350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751974356800