Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1 152 2e-34 >seq1 Length=3519 Score = 152 bits (168), Expect = 2e-34 Identities = 114/133 (86%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 551 GTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCC 610 ||||| | |||||| || ||||||||||||||||||||||||| || ||||||||| || Sbjct 1973 GTAAGCGTATAGCT--TGAGACCCGAAAGATGGTGAACTATGCCCGAGTAGGGTGAAACC 2030 Query 611 AGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTG 670 || |||||| |||||||| ||||| || | ||||| |||||||||||||| ||| ||| Sbjct 2031 AGCGGAAACACTGGTGGAAGCTCGAAGTGATTCTGACGTGCAAATCGATCACAAAACTTG 2090 Query 671 GGTATAGGGGCGA 683 ||||||||||||| Sbjct 2091 GGTATAGGGGCGA 2103 Score = 122 bits (134), Expect = 4e-25 Identities = 126/163 (77%), Gaps = 3/163 (2%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||| |||| | ||||| ||| ||||| |||| | ||| || || |||||| Sbjct 1277 GAGTCGGATTGCTTGGAAGTGCAGTCTTAATATGGGTGGTAGACTTCATCCAAGGCTAAA 1336 Query 99 TAT--TGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTG 156 ||| || | ||||||||||||| ||||||| |||| ||||| ||||||| |||||| Sbjct 1337 TATGTTGACACGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGTTGAAAAGTACTTTG 1396 Query 157 GAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||||||||||| || | |||||| || ||||||||| Sbjct 1397 AAAAGAGAGTTAAACAGAAAGTGAAACCGTATGGAGGGAAGCG 1439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079924496000