Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2489 95.1 1e-14 seq2628 86.0 5e-12 >seq2489 Length=37580 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| || || | |||| ||||| | |||||||| || | ||||||| | | | Sbjct 24551 ACAAATTTTGGTAAAGCAATGGATGCCAAATTGCAGACCGCAGTTTCGTCAGCATTCGAA 24492 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 || || | |||||| || || ||||||||||| ||| || || | || || ||||| Sbjct 24491 TATTCTATAATTTCTGTACATAGATTACTGCACTTTATAGTTCCAACGTTTTGCTGATTT 24432 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 || | ||||||||||||||| |||| ||| || || || || |||| ||| || Sbjct 24431 GATTTACTATTGCATGCATCCTTATACAACATATATGGTACACCTGTTTCAATTTGTGAA 24372 Query 66173 TCAATGATGGCGTGCCA 66189 | || || |||||||| Sbjct 24371 TTTATAATAGCGTGCCA 24355 Score = 91.5 bits (100), Expect = 1e-13 Identities = 206/308 (67%), Gaps = 4/308 (1%) Strand=Plus/Minus Query 66262 TTCACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACC 66321 ||||||||| || || || | || ||| | |||||| || || | ||||| | Sbjct 23373 TTCACCCCAAACATCATCCAATCCACGAAACTCATTTGGACAAATAAGTGTCCAATTTTC 23314 Query 66322 ATCCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGA--TCG 66379 ||| | ||||||||| | |||||| | |||||||||||| | || ||||| | | || Sbjct 23313 ATCTTTTTCTACACGTCTCATAAACAAATCAGGTATCCACAATGCATAGAATAAATCTCT 23254 Query 66380 CGTGCTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCG 66439 ||| | ||| || | | || ||| ||||||| || || ||||| || || Sbjct 23253 CGTTTTGGTT--TCATTAGAACCAATATTAGTGCGCAATGTAAGAAAATCAAAAATATCA 23196 Query 66440 GCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCG 66499 |||||||| ||||| | || ||||||| | || | |||| ||||||||||| Sbjct 23195 GCATGCCAAGGTTCTAAATAAATGGCGATTGCTCCGGGTCTTTTGTTACCACCTTGGTCT 23136 Query 66500 ACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCA 66559 || || ||||| || || || || ||||| || || | || || ||| | ||| Sbjct 23135 ACATATCGAGCTGTGGCGTCAAAAACTCGTAACATAGGAACAATTCCATTTGATGTTCCA 23076 Query 66560 TTGGTGCC 66567 || || || Sbjct 23075 TTCGTTCC 23068 >seq2628 Length=67642 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 61704 TGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCGTCTCACTCATCGG 61763 ||| || || | || ||||| |||||| | ||||||||||||||||| ||| ||||| Sbjct 41670 TGAAGCTGTTGCAATTGAACAAGAATTTTTAACTGACGCTTTGCCCGTTAGACTAATCGG 41729 Query 61764 CATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA 61823 |||||| || |||||| || |||||||||||||||| || || ||| | Sbjct 41730 CATGAACCATGATTTAATGTGTCAATATATTGAATTTGTTGGTGATTACCTTTTGCAAAA 41789 Query 61824 T-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTCATGGACATGATTT 61882 | |||| | || | | || ||| | | || || |||||||||||||| | ||| Sbjct 41790 TCTTGGACAACAAAAAG-TTTACAATTCAGATAATCCCTTTGATTTCATGGATAATATTA 41848 Query 61883 CGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTATCA 61931 | | || ||||| || ||||| || ||| ||||| || || || Sbjct 41849 GTATTGGAGGAAAGACAAACTTTTTTGAACGACGAGTAGGAGAATACCA 41897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397550944332800