Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Intoshia_20linei_20[genbank_20GCA_5F001642005.1_202016-05-10] 3,520 sequences; 41,603,068 total letters Query= NC_033034.1 Length=13000 Score E Sequences producing significant alignments: (Bits) Value seq3396 78.8 8e-11 >seq3396 Length=24251 Score = 78.8 bits (86), Expect = 8e-11 Identities = 111/152 (73%), Gaps = 3/152 (2%) Strand=Plus/Minus Query 8232 TTGGCCAATCACATCGATTATGAGAAATGGAATAACCACCAACGACAAGCCTCGACTGGT 8291 || ||| ||||| | ||||||||||||||||||||||||||||| | | ||||| | Sbjct 5195 TTTGCCTATCACTTGCATTATGAGAAATGGAATAACCACCAACGATACGAATCGACGGCG 5136 Query 8292 CCTGTATTTAAGGTGATGGGACAATTC-TTGGGTTACCCTAATTTAATTTACAGAACACA 8350 || ||| | || || || || || || |||| | | || |||||| | |||||| Sbjct 5135 CCAAACTTTGAAGTTAT-TGATAAGTCATTTGGTTTCACCAA-TTAATTAAACAAACACA 5078 Query 8351 CGAATTTTTTGAGAAAAGCCTGATTTATTATG 8382 | |||| ||||| || |||||||||||| Sbjct 5077 CAAATTCTTTGAACAATCTTTGATTTATTATG 5046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 41483157201920