Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lingula_20anatina_20[refseq_20GCF_5F001039355.1_202015-06-24] 3,830 sequences; 425,494,968 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1979 138 9e-28 seq3660 132 4e-26 >seq1979 Length=378058 Score = 138 bits (152), Expect = 9e-28 Identities = 146/190 (77%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 66280 CAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACG 66339 ||||| ||||||| | ||||||||||||| ||| | |||| |||||| ||||| Sbjct 362942 CAGACCAGGACACTCATTGGGACACATCAGCGTCCACTGTCCATTCTGTTCCACACGTTT 362883 Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||||||||| ||||| | ||| | || || ||||| || | Sbjct 362882 CATGAACAGATCTGGGATCCAGAGGGCATAGAACAAATCTCTGGCACGCTGCTCTTCCTT 362823 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| | || || |||| ||||| |||||||||||| |||||| |||||||||| Sbjct 362822 TCCAGTGTTCTTCTTGC-AGTCCAGGAAGTCAAAGATGTCGTTATGCCAGGGTTCCAGGT 362764 Query 66459 AGATGGCGAA 66468 ||||||| || Sbjct 362763 AGATGGCAAA 362754 >seq3660 Length=165149 Score = 132 bits (146), Expect = 4e-26 Identities = 145/190 (76%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 66280 CAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACG 66339 ||||| ||||||| | ||||||||||||| ||| | |||| |||||| ||||| Sbjct 78746 CAGACCAGGACACTCATTGGGACACATCAGCGTCCACTGTCCATTCTGTTCCACACGTTT 78687 Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || ||||||||||| ||||| | ||| | || || ||||| || | Sbjct 78686 CATGAACAGATCTGGGATCCAGAGGGCATAGAACAAATCTCTGGCACGCTGCTCTTCCTT 78627 Query 66400 GCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGT 66458 || ||| | || || |||| ||||| ||||||||||| |||||| |||||||||| Sbjct 78626 TCCAGTGTTCTTCTTGC-AGTCCAGGAAGTCAAAGATGTCATTATGCCAGGGTTCCAGGT 78568 Query 66459 AGATGGCGAA 66468 ||||||| || Sbjct 78567 AGATGGCAAA 78558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397549442271200