Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq134406 77.0 6e-12 seq36989 75.2 2e-11 seq71608 73.4 8e-11 seq15485 73.4 8e-11 >seq134406 Length=645 Score = 77.0 bits (84), Expect = 6e-12 Identities = 96/128 (75%), Gaps = 4/128 (3%) Strand=Plus/Plus Query 207 ACGGAA-TACTAA-CCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCG 264 |||||| || ||| ||||||| |||||| ||| ||| || ||||| | ||| Sbjct 497 ACGGAAATATTAATCCGTTTC--CCATCGACTACGCATTTCTGCCTCGCCTTAGGGGCCG 554 Query 265 ACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTC 324 |||||||||| | ||||||| | ||||||||||| ||||| ||||| |||||||| Sbjct 555 ACTTACCCTGCCCTGATTAGCATGGGACAGGAAACCTTGGTCTTCCGGCGTGGGGGTTTT 614 Query 325 CCACCCCC 332 ||||||| Sbjct 615 TCACCCCC 622 >seq36989 Length=346 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/122 (75%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 212 ATACTAA-CCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACCCGACTTAC 270 ||| ||| ||||||| |||||| ||| ||| || ||||| | ||||||||| Sbjct 1 ATATTAATCCGTTTC--CCATCGACTACGCATTTCTGCCTCGCCTTAGGGGCCGACTTAC 58 Query 271 CCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTTTCCCACCC 330 |||| | ||||||| | ||||||||||| ||||| ||||| |||||||| ||||| Sbjct 59 CCTGCCCTGATTAGCATGGGACAGGAAACCTTGGTCTTCCGGCGTGGGGGTTTTTCACCC 118 Query 331 CC 332 || Sbjct 119 CC 120 >seq71608 Length=1524 Score = 73.4 bits (80), Expect = 8e-11 Identities = 95/130 (73%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 203 AGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGACC 262 |||| |||||| ||||| || | |||||| ||| ||| || ||||| | | Sbjct 388 AGTACAGGAATATTAACCTGTTTT-CCATCGACTACGCTTTTCAGCCTCGCCTTAGGGAC 330 Query 263 CGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGTT 322 ||||| |||||| |||||| || || ||||||||||| ||||||||||| ||| ||| Sbjct 329 CGACTAACCCTGCGTCGATTAACGTTGCGCAGGAAACCTTGGTCTTTCGGCGTGGGTGTT 270 Query 323 TCCCACCCCC 332 | ||| ||| Sbjct 269 TTTCACACCC 260 >seq15485 Length=396 Score = 73.4 bits (80), Expect = 8e-11 Identities = 96/131 (73%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 203 AGTAACGGAATACTAACC-GTTTCTGCCATCGGTCTCGCCGTTCGGCTGAACCTTATGAC 261 |||| |||||| ||||| ||||| |||||| ||| ||| || ||||| | Sbjct 216 AGTACGGGAATATTAACCCGTTTC--CCATCGACTACGCTCTTCAGCCTCGCCTTAGGGA 159 Query 262 CCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTTCGGCGAGGGGGT 321 |||||| |||||| |||||| || || |||||| |||| ||||||||||| ||| || Sbjct 158 CCGACTCACCCTGCGTCGATTAACGTTGCGCAGGAACCCTTGGTCTTTCGGCGTGGGAGT 99 Query 322 TTCCCACCCCC 332 || ||| ||| Sbjct 98 TTTTCACTCCC 88 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 956901177600