Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq26321 203 6e-50 seq53099 187 5e-45 seq37825 183 6e-44 seq48931 134 3e-29 seq38156 105 1e-20 >seq26321 Length=812 Score = 203 bits (224), Expect = 6e-50 Identities = 242/324 (75%), Gaps = 6/324 (2%) Strand=Plus/Plus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGATTCG 70 ||||| |||||||||| |||||| ||| | ||||||| || ||||| || | ||| Sbjct 418 AGGGGAGTGAAATAGAACCTGAAACCGTATACGTACAAGCAGTGGGAGCAGACTTGTTCT 477 Query 71 GTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAGG 130 ||||| |||| ||||||| |||||| | | ||| ||| | | | ||| |||||||| Sbjct 478 GTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTA-TATTTAGTAGCAAGGTTAAGC 536 Query 131 GCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCGC 190 | | || || ||||| || ||||||||| ||||| | ||| ||||| | | Sbjct 537 GAAT-AG---CGG-AGCCGTAGCGAAAGCGAGTGTTAACTGCGCGTTTAGTTGCTAGGTA 591 Query 191 TAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGG 250 ||||| ||||||| |||||||| ||| | ||||||||||| ||||| ||| Sbjct 592 TAGACCCGAAACCCGGTGATCTAGCCATGGGCAGGTTGAAGGTTGAGTAACATCAACTGG 651 Query 251 AGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGC 310 |||||||||||| |||||||||||||| ||||||||| | || | |||||||||||| Sbjct 652 AGGACCGAACCGACTAACGTTGAAAAGTTAGCGGATGACTTGTGGCTGGGGGTGAAAGGC 711 Query 311 CAATCAAACTGGGAAATAGCTCGT 334 ||||||||| |||| |||||| || Sbjct 712 CAATCAAACCGGGAGATAGCTGGT 735 >seq53099 Length=925 Score = 187 bits (206), Expect = 5e-45 Identities = 238/325 (73%), Gaps = 7/325 (2%) Strand=Plus/Minus Query 11 AGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAGTGA-TTC 69 ||||| |||||||||| |||||| ||| || ||||||| || ||||| || | ||| Sbjct 524 AGGGGAGTGAAATAGATCCTGAAACCGTATGCGTACAAGCAGTGGGAGCAGACTTTGTTC 465 Query 70 GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGCGAGGTTAAG 129 ||||| |||| ||||||| |||||| | | ||| ||| | ||| ||||| |||| Sbjct 464 TGTGACTGCGTACCTTTTGTATAATGGGTCAGCGACTTATTT-TCAGTGGCGAGCTTAAC 406 Query 130 GGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGACGAGTTGGTGGCG 189 | | || || || || ||||||||| ||||| |||||| | ||| | ||| Sbjct 405 CGAATAGGGG-----AGGCGTAGCGAAAGCGAGTCTTAATAGGGCGTCTAGTCGCTGGGA 351 Query 190 CTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATG 249 ||||| ||||||| | |||||| ||| | ||||||||||| |||||| | || Sbjct 350 ATAGACCCGAAACCGGGCGATCTATCCATGGGCAGGTTGAAGGTTGGGTAACACTAACTG 291 Query 250 GAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGG 309 ||||||||||||| | |||||||||||| |||||||| | || | || |||||||| Sbjct 290 GAGGACCGAACCGACTACCGTTGAAAAGTTAGCGGATGACCTGTGGATCGGAGTGAAAGG 231 Query 310 CCAATCAAACTGGGAAATAGCTCGT 334 | |||||| || ||| |||||| || Sbjct 230 CTAATCAAGCTCGGAGATAGCTGGT 206 >seq37825 Length=1228 Score = 183 bits (202), Expect = 6e-44 Identities = 245/335 (73%), Gaps = 12/335 (4%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCCGAG 63 ||||| ||||| |||||| || |||||| | | |||||||||| || |||| | Sbjct 241 CCCGATGAGGGGAGTGAAACAGTACCTGAAACGGATTGCCTACAAGCAGTTGGAGG---G 297 Query 64 TGATTCGG---TGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCAGC 120 | || | |||| |||| ||| |||||||||| | || || ||| | || | ||| Sbjct 298 TCCTTGAGGCCTGACAGCGTACCTCTTGCATAATGGGTCTGTGACTTAAT-GTATCAAGC 356 Query 121 GAGGTTAAGGGCTTCAGGCCCGTTAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GA 179 || ||||| || ||| ||| || || ||||||||| || || |||||| | || Sbjct 357 AAGCTTAAGCCGTT-AGGTG---TAGGCGCAGCGAAAGCGAGTCTGAATAGGGCGCCAGA 412 Query 180 GTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGGTA 239 ||| | | ||||| ||||||| | |||||| || || |||| ||||| |||||| Sbjct 413 GTTTGATGTATTAGACCCGAAACCCGGCGATCTAGGCATGACCAGGATGAAGGTGCGGTA 472 Query 240 ACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGTAG 299 || || |||||| |||||||| | |||||||||||||| ||||||| | | | ||| Sbjct 473 ACACGCACTGGAGGTCCGAACCGATTAACGTTGAAAAGTTACCGGATGAGTTGTGTTTAG 532 Query 300 GGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||||||||||||||||| | ||||||||||| || Sbjct 533 GGGTGAAAGGCCAATCAAGCCGGGAAATAGCTGGT 567 >seq48931 Length=594 Score = 134 bits (148), Expect = 3e-29 Identities = 103/122 (84%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 215 CCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAA 274 ||| | ||||| ||||| | |||||| | |||||| |||||||||| |||||||| Sbjct 594 CCATGGGCAGGGTGAAGCTGTGGTAACACACAGTGGAGGCCCGAACCGGTTGACGTTGAA 535 Query 275 AAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 |||| |||||||||| | ||||||||||||||||||||||||||| ||||||||||||| Sbjct 534 AAGTCTTCGGATGACCTGTGGGTAGGGGTGAAAGGCCAATCAAACTCGGAAATAGCTCGT 475 Query 335 AC 336 || Sbjct 474 AC 473 >seq38156 Length=889 Score = 105 bits (116), Expect = 1e-20 Identities = 139/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Plus Query 148 CGAAGTGAAAGCGAGCCTTAACAGGGCGAC-GAGTTG-GTGGCGCTAGACGCGAAACCTT 205 || || ||||||||| || || |||||||| ||||| |||| ||||| ||||||| Sbjct 40 CGTAGCGAAAGCGAGTCTGAATAGGGCGACTGAGTTAAGTGGAT-TAGACCCGAAACCCG 98 Query 206 GTGATCTACCCACGAGCAGGTTGAAGTCGCGGTAACGCGTGATGGAGGACCGAACCGGTA 265 | |||||| | | ||||||||||| || ||||| | |||||||||||||| Sbjct 99 GCGATCTAGTTATGGGCAGGTTGAAGGTGCAGTAACATGCACTGGAGGACCGAACCCACG 158 Query 266 AACGTTGAAAAGTTTTCGGATGACTCGCGGGTAGGGGTGAAAGGCCAATCAAACTGGGAA 325 |||||||| ||||||| | | ||||||||||||||||||||| | |||| Sbjct 159 TCTGTTGAAAAAGACGGGGATGACCTGTGACTAGGGGTGAAAGGCCAATCAAGCCGGGAG 218 Query 326 ATAGCTCGT 334 |||||| || Sbjct 219 ATAGCTGGT 227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 969659859968