Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq6532 230 3e-58 seq262164 140 5e-31 seq205202 140 5e-31 seq4270 104 4e-20 seq187789 95.1 2e-17 seq39898 89.7 8e-16 seq92620 80.6 4e-13 seq26994 77.0 5e-12 >seq6532 Length=9725 Score = 230 bits (254), Expect = 3e-58 Identities = 196/235 (83%), Gaps = 5/235 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| | Sbjct 5258 GTACAAAGGGCAGGGACGTAATCAACGCGAGCT-GATGACTCGCGCTTACTGGGAATT-C 5315 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-ATT 119 |||||| ||| || ||||||||| |||||||||||||| | | |||| | ||| Sbjct 5316 CTCGTTCAAGGGAAATAATTGCAATTCCCTATCCCCATCACGGAGGAGGTTCAGCGGATT 5375 Query 120 ACCCGGACCTGTCGGCCAAGGT-GATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||| ||||| ||||||||| | | || || ||| | | ||||||||||||||||| Sbjct 5376 ACCCAGACCTTCCGGCCAAGGGCGGTGTACCCGCTGATTCCGCCAGTGTAGCGCGCGTGC 5435 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||| |||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 5436 GGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCGTGGC 5489 >seq262164 Length=90925 Score = 140 bits (154), Expect = 5e-31 Identities = 141/177 (80%), Gaps = 6/177 (3%) Strand=Plus/Plus Query 59 TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAG-A 117 |||||||| ||| || ||||||||| |||||||||||||| | | |||| | | Sbjct 6417 TCCTCGTTCAAGGA-AATAATTGCAATTCCCTATCCCCATCACGGAGGAGGTTCAGCGGA 6475 Query 118 TTACCCGGACCTGTCGGCCAAGGT-GATAGACTCGTTGAATACATCAGTGTAGCGCGCGT 176 |||||| ||||| ||||||||| | | || ||| || | ||||||||||||||| Sbjct 6476 TTACCCAGACCTTCCGGCCAAGGGCGGTGTACCCGTG--ATTCCGCAGTGTAGCGCGCGT 6533 Query 177 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||| |||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 6534 GCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGCGTGGC 6589 >seq205202 Length=686 Score = 140 bits (154), Expect = 5e-31 Identities = 118/141 (84%), Gaps = 3/141 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||||||| |||||||||||||||||| |||| ||| Sbjct 169 GTACAAAGGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTGGGAA-TTC 226 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 |||||| ||| || ||||||||| |||||||||||||| | | |||| |||| Sbjct 227 CTCGTTCAAGGGAAATAATTGCAATTCCCTATCCCCATCACGGAGGAGGTTCAGCGGATT 286 Query 120 ACCCGGACCTGTCGGCCAAGG 140 |||| ||||| ||||||||| Sbjct 287 ACCCAGACCTTCCGGCCAAGG 307 Score = 104 bits (114), Expect = 4e-20 Identities = 67/72 (93%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 563 CAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 621 Query 222 AACTTCCGTGGC 233 | || |||||| Sbjct 622 ATCTCGCGTGGC 633 Score = 87.8 bits (96), Expect = 3e-15 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 56 ATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-A 114 ||| ||||||| ||| || ||||||||| |||||||||||||| | | |||| Sbjct 380 ATTACCTCGTTCAAGGGAAATAATTGCAATTCCCTATCCCCATCACGGAGGAGGTTCAGC 439 Query 115 AGATTACCCGGACCTGTCGGCCAA-GGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173 |||||||| ||||| ||||||| || | | || || ||| | | |||||||||||| Sbjct 440 GGATTACCCAGACCTTCCGGCCAAGGGCGGTGTACCCGCTGATTCCGCCAGTGTAGCGCG 499 Query 174 CGTGCGGCCC 183 |||||||||| Sbjct 500 CGTGCGGCCC 509 >seq4270 Length=118 Score = 104 bits (114), Expect = 4e-20 Identities = 67/72 (93%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 3 CAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 61 Query 222 AACTTCCGTGGC 233 | || |||||| Sbjct 62 ATCTCGCGTGGC 73 >seq187789 Length=173 Score = 95.1 bits (104), Expect = 2e-17 Identities = 57/60 (95%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 169 GCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||| Sbjct 173 GCGCGCGTGCGGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCCCCAACTTCC 114 >seq39898 Length=76 Score = 89.7 bits (98), Expect = 8e-16 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTA 213 |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 52 CAGTGTAGCGCGCGTGCGGCCCCGAACATCTAAGGGCATCACAGACCTGTTA 1 >seq92620 Length=28825 Score = 80.6 bits (88), Expect = 4e-13 Identities = 54/58 (93%), Gaps = 2/58 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 |||||| ||||||||||||| ||||||||||| |||||||||||||||||| |||||| Sbjct 18644 GTACAA-GGGCAGGGACGTAATCAACGCGAGC-TGATGACTCGCGCTTACTGGGAATT 18699 >seq26994 Length=39672 Score = 77.0 bits (84), Expect = 5e-12 Identities = 131/177 (74%), Gaps = 16/177 (9%) Strand=Plus/Minus Query 55 AATTTCCTCGTTGAAGACCAACAATTGCAATGATCTA-TCCCCATCACGATGAAATTTCA 113 |||| |||||| ||| || ||||||||| || ||||||||||| || | |||| Sbjct 8296 AATTCGCTCGTTCAAGGGAAATAATTGCAATTCCATAATCCCCATCACG--GAGAGTTCA 8239 Query 114 AAG-ATTACCCGGACCTGT--CGGC-CAAGGT-GATAGACTCGT--TGAATACATCAGTG 166 | ||||||| |||| |||| ||||| | | || | ||| | | ||||| Sbjct 8238 GCGGATTACCCAGACCAACTCCGGCGCAAGGGCGGTGTACGCCGAATGATTCCGCCAGTG 8179 Query 167 TAG--CGCGCGTGCGGCCC-AGAA-CATCTAAGGGC--ATCACAGACCTGTTATTGC 217 ||| |||||||||||||| |||| ||||||||||| ||||||||||||||||||| Sbjct 8178 TAGGGCGCGCGTGCGGCCCCAGAAGCATCTAAGGGCGCATCACAGACCTGTTATTGC 8122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 749648445710