Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq97516 269 5e-70 seq6532 208 1e-51 seq262164 188 1e-45 seq310155 102 1e-19 seq298634 73.4 7e-11 >seq97516 Length=324 Score = 269 bits (298), Expect = 5e-70 Identities = 220/261 (84%), Gaps = 7/261 (3%) Strand=Plus/Plus Query 61 GGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC--TCGA 118 |||| || | | |||||| ||| ||| ||||||||||||||||||| | || | || Sbjct 26 GGGATCCTCGTCATTTACTGTGAGCAAAATAGAGTGTTCAAAGCAGGCTTAGGCCGTTGA 85 Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 ||||||||||||||||||||| ||||||| | | |||||||||||||||| | | Sbjct 86 ATACATTAGCATGGAATAATAAGATAGGACCTTGG--TCTATTTTGTTGGTTTGC-GTTC 142 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGG-TGTCAGTATTCAATTGTCAGAGGTGAAA 237 | ||||||||||||||||||||| ||||| | | ||||||||||||||||||||||| Sbjct 143 CAAGGTAATGATTAATAGGGATAGTTGGGGGGTATTCGTATTCAATTGTCAGAGGTGAAA 202 Query 238 TTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAA 297 ||||||||||||| |||||| ||||||||||||||| || |||||||||||||||||||| Sbjct 203 TTCTTGGATTTATGGAAGACGAACTACTGCGAAAGCATTTACCAAGGATGTTTTCATTAA 262 Query 298 TCAGTGAACGAAAGTTAGGGG 318 ||| |||||||||||||||| Sbjct 263 TCA-AGAACGAAAGTTAGGGG 282 >seq6532 Length=9725 Score = 208 bits (230), Expect = 1e-51 Identities = 220/282 (78%), Gaps = 6/282 (2%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||||| | || |||| | || ||| | ||| | ||||||||||||||||| ||||||| Sbjct 6184 TGCCCTTGATTGAGTGT-CGGGAGAGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTT 6126 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||||| || ||| | ||||||||||||| ||||||||| | |||||| Sbjct 6125 CAAAGCAGGCCTCGCGCCTGAACAGCAGAGCATGGAATAATGGAATAGGACCT-CGGTTC 6067 Query 158 TATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | || || ||||||||||| ||||| | |||||| | || Sbjct 6066 TATTGCGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACTGACGGGGGCATTCGT 6007 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| ||||||||||||||||||| ||||| | | ||||||||||| || Sbjct 6006 ATTGCGGTGTGAGAGGTGAAATTCTTGGATCGCCGCAAGACGACCGACTGCGAAAGCATT 5947 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| ||||||||||||| || Sbjct 5946 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 5906 >seq262164 Length=90925 Score = 188 bits (208), Expect = 1e-45 Identities = 218/282 (77%), Gaps = 9/282 (3%) Strand=Plus/Minus Query 40 TGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGTT 98 ||||||| | || ||| | || ||| | ||| | ||||||||||||||||| ||||||| Sbjct 7279 TGCCCTTGATTGAGTGC-CAGGAGAGGCCGGAACGTTTACTTTGAAAAAATTGGAGTGTT 7221 Query 99 CAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 |||||||||||| || ||| | ||||||||||||| ||||||||| | |||||| Sbjct 7220 CAAAGCAGGCCTCGCGCCTGAACAGCAGAGCATGGAATAATGGAATAGGACCT-CGGTTC 7162 Query 158 TATTTTGTTGGTTTCTAGGAC-CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 |||| |||||||| | || || ||||||||||| ||||| | ||||| || || Sbjct 7161 TATTGCGTTGGTTTTCGGAACTCGAGGTAATGATTAAGAGGGACTGACGGGGCATTC-GT 7103 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| ||| |||||||||||| |||||| ||||| || ||||||||||| || Sbjct 7102 ATTGCGGTGTGAGAGGTGAAATT-TTGGATCGCCGCAAGAC-GACGACTGCGAAAGCATT 7045 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||||| |||||||||||||||| ||||||||||||| || Sbjct 7044 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTTAGAGG 7004 >seq310155 Length=126 Score = 102 bits (112), Expect = 1e-19 Identities = 89/108 (82%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 65 GCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACA 123 ||| | || ||||||||||||||||| ||||||||||||||||||| || ||| | Sbjct 108 GCCGGAACGTTTACTTTGAAAAAATTGGAGTGTTCAAAGCAGGCCTCGCGCCTGAACAGC 49 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTT 171 ||||||||||||| ||||||||| | |||||||||| |||||||| Sbjct 48 AGAGCATGGAATAATGGAATAGGACCT-CGGTTCTATTGCGTTGGTTT 2 >seq298634 Length=89885 Score = 73.4 bits (80), Expect = 7e-11 Identities = 70/86 (81%), Gaps = 3/86 (3%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT-TGCTCGAATACATTAGCATGG 132 ||||||||||||||||| || ||||||||||||||||| ||| ||| | ||||||| Sbjct 47419 TTTACTTTGAAAAAATTGGAATGTTCAAAGCAGGCCTTGCGCT-GAACAGCAGAGCATGG 47477 Query 133 AATAATAGAATAGGACGTGCGGTTCT 158 ||||| ||||| || | ||||||| Sbjct 47478 AATAAAGTAATAGCACCT-CGGTTCT 47502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 912245789312