Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq262164 145 3e-32 seq6532 118 4e-24 seq19459 86.0 3e-14 >seq262164 Length=90925 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||| || ||| |||||||||||||||||| | ||| Sbjct 18653 GGACCCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCGGTGGGA 18594 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||||| ||||| ||||||||||||||||| | |||||||||||||||| Sbjct 18593 GGTCCGCAGCGATTCTGACGTGCAAATCGATCGTCCGACTTGGGTATAGGGGCGA 18539 Score = 143 bits (158), Expect = 1e-31 Identities = 99/111 (89%), Gaps = 1/111 (1%) Strand=Plus/Minus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 |||||||||||||||||||||| || ||| ||||||||||||||||||||||||||| Sbjct 22035 CCGAAAGATGGTGAACTATGCCCGAGCAGGATGAAGCCAGAGGAAACTCTGGTGGAGGTC 21976 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| ||||| |||| |||||||||||| | |||||||||||||||| Sbjct 21975 CGCAGCGATTCTGACGTG-AAATCGATCGTCCGACTTGGGTATAGGGGCGA 21926 Score = 113 bits (124), Expect = 2e-22 Identities = 112/144 (78%), Gaps = 1/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| || |||| ||||||| || | || | ||| ||| || | | || || |||||| Sbjct 22802 GAGTCGGGTAGTTTTGGAATGCTGCCCAAAGAGGGGTGGTGAACTCCATCCAAGGCTAAA 22743 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 || |||| |||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 22742 TACTGGCACGAGACCGATAGCAGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGAA 22683 Query 159 AAGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 22682 GAGAGAGTTCAAGAGGACGTGAAA 22659 Score = 111 bits (122), Expect = 7e-22 Identities = 111/143 (78%), Gaps = 1/143 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| || |||| ||||||| || | || ||| ||| || | | || || ||||||| Sbjct 19415 GAGTCGGGTAGTTTTGGAATGCTGCCCAAAGAGGGTGGTGAACTCCATCCAAGGCTAAAT 19356 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | |||| |||||||||||| ||||||| |||| ||||| ||||||| ||| || | Sbjct 19355 ACTGGCACGAGACCGATAGCAGACAAGTACCGTGA-GGAAAGTTGAAAAGAACTCTGAAG 19297 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 |||||||| || || |||||||| Sbjct 19296 AGAGAGTTCAAGAGGACGTGAAA 19274 >seq6532 Length=9725 Score = 118 bits (130), Expect = 4e-24 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAA-ATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 |||||| ||||||| |||||||||| | || | ||| ||| || | | || || |||||| Sbjct 3847 GAGTCGGGTTGTTTTGGAATGCAGCCCAAAGAGGGGTGGTGAACTCCATCCAAGGCTAAA 3788 Query 99 TATTGGC-CAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGG 157 || |||| | |||||||||||| ||||||| |||| ||||| ||||||| ||| || Sbjct 3787 TACTGGCACGGAGACCGATAGCAGACAAGTACCGTGAGGGAAAGTTGAAAAGAACTCTGA 3728 Query 158 AAAGAGAGTTAAAAAGCACGTGAA 181 | |||||||| || || ||||||| Sbjct 3727 AGAGAGAGTTCAAGAGGACGTGAA 3704 >seq19459 Length=205 Score = 86.0 bits (94), Expect = 3e-14 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 93 GCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCAC 152 |||||||| |||| |||||||||||| ||||||| |||| ||||| ||||||| || Sbjct 113 GCTAAATACTGGCACGAGACCGATAGCAGACAAGTACCGTGAGGGAAAGTTGAAAAGAAC 172 Query 153 TTTGGAAAGAGAGTTAAAAAGCACGTGAAA 182 | || | |||||||| || || |||||||| Sbjct 173 TCTGAAGAGAGAGTTCAAGAGGACGTGAAA 202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2073076068700