Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq110105 441 2e-121 seq274740 412 9e-113 seq45914 286 9e-75 seq263711 179 1e-42 seq264214 150 5e-34 >seq110105 Length=1201 Score = 441 bits (488), Expect = 2e-121 Identities = 339/401 (85%), Gaps = 1/401 (0%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||| ||||||||||||||| |||||||||||||||||||||||| ||||||| |||||| Sbjct 310 AGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCGAGCGTT 369 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||||||||||||||||||| ||||||||||| | |||| || ||||||| || Sbjct 370 AATCGGAATTACTGGGCGTAAAGCGCACGCAGGCGGTTATATAAGCTAGATGTGAAAGCC 429 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGT 189 ||||||| ||||||||||| |||||| |||| | ||||||||| | ||||||| || Sbjct 430 CCGGGCTCAACCTGGGAATAGCATTTAGAACTGTATGACTAGAGTCTTGGAGAGGGGAGT 489 Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 ||||||||| ||||||| ||||||||||||||||| |||||||||| || |||||||||| Sbjct 490 GGAATTCCAGGTGTAGCGGTGAAATGCGTAGATATCTGGAGGAACATCAGTGGCGAAGGC 549 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | |||||| || ||||||||||||| |||||| ||||| ||| |||||||||||| Sbjct 550 GACTCCCTGGCCAAAGACTGACGCTCATGTGCGAAAGTGTGGGTAGCGAACAGGATTAGA 609 Query 310 TACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTG-TTGGGGATTTACTTCCTTG 368 |||||||||||||||| || |||||| | || ||||| || ||| | |||| | | | Sbjct 610 TACCCTGGTAGTCCACACCGTAAACGCTGTCTACTAGCTGTTTGTGTATTTGATACGTGA 669 Query 369 GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 ||| || |||||||||| |||| ||||||||||||| ||| Sbjct 670 GTAGCGAAGCTAACGCGCTAAGTAGACCGCCTGGGGAGTAC 710 >seq274740 Length=1326 Score = 412 bits (456), Expect = 9e-113 Identities = 336/403 (83%), Gaps = 5/403 (1%) Strand=Plus/Plus Query 10 AGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTT 69 |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| Sbjct 467 AGAATAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTT 526 Query 70 AATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCC 129 ||||||||||||||||||||||||| ||| ||| |||| |||| | |||||||||| Sbjct 527 AATCGGAATTACTGGGCGTAAAGCGCGCGTAGGTGGTTCGTTAAGTTGGATGTGAAATCC 586 Query 130 CCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGA-CTAGAGTGTGTCAGAGGGGGG 188 ||||||| |||||||||| |||||| |||| |||| ||||||| || |||||| || Sbjct 587 CCGGGCTCAACCTGGGAACTGCATTCAAAACTG-ACGAGCTAGAGTATGGTAGAGGGTGG 645 Query 189 TGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGG 248 ||||||| | ||||||| ||||||||||||||||| | |||||||||| ||||||||| Sbjct 646 TGGAATTTCCTGTGTAGCGGTGAAATGCGTAGATATAGGAAGGAACACCAGTGGCGAAGG 705 Query 249 CAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAG 308 | || ||||| | | |||||| || | | |||||||||||||||||||||||||||| Sbjct 706 CGACCACCTGGACTGATACTGACACTGAGGTGCGAAAGCGTGGGGAGCAAACAGGATTAG 765 Query 309 ATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGAT--TTACTTCCT 366 |||||||||||||||||||| |||||||| || ||||| ||| ||||| || || Sbjct 766 ATACCCTGGTAGTCCACGCCGTAAACGATGTCGACTAGCCGTT-GGGATCCTTGAGATCT 824 Query 367 TGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | || || ||||||||| | |||| ||||||||||||| ||| Sbjct 825 TAGTGGCGCAGCTAACGCATTAAGTCGACCGCCTGGGGAGTAC 867 >seq45914 Length=378 Score = 286 bits (316), Expect = 9e-75 Identities = 288/372 (77%), Gaps = 2/372 (1%) Strand=Plus/Minus Query 39 CAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCG 98 |||||||||||||||| |||| || ||||||| ||||||||||||||||||||||| || Sbjct 378 CAGCCGCGGTAATACGGAGGGAGCTAGCGTTATTCGGAATTACTGGGCGTAAAGCGCACG 319 Query 99 CAGGCGGTTGTGTAAGACAGGTGTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTG 158 |||||| | |||||| || |||||| || | ||| ||| ||||||| ||| | Sbjct 318 TAGGCGGCTTTGTAAGTTAGAGGTGAAAGCCTGGAGCTCAACTCCAGAATTGCCTTTAAG 259 Query 159 ACTGCACGACTAGAGTGTGTCAGAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGT 218 |||||| || || | ||||| | |||||||||| |||||| ||||||| ||| Sbjct 258 ACTGCATCGCTTGAATCCAGGAGAGGTGAGTGGAATTCCGAGTGTAGAGGTGAAATTCGT 199 Query 219 AGATATGTGGAGGAACACCAATGGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATG 278 |||||| ||| |||||||| |||||||||| || | |||| | | ||||||| | | Sbjct 198 AGATATTCGGAAGAACACCAGTGGCGAAGGCGGCTCACTGGACTGGTATTGACGCTGAGG 139 Query 279 CACGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCACGCCCTAAACGATA 338 ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| Sbjct 138 TGCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGT-CACGCCGTAAACGATG 80 Query 339 TCAACTAGTTGTTGGGGAT-TTACTTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCG 397 |||||| ||| |||| | ||| | | ||| || ||||||||| | | | ||| Sbjct 79 ATAACTAGCTGTCGGGGCTCTTAGAGCTTCGGTGGCGCAGCTAACGCATTTAAGTATCCG 20 Query 398 CCTGGGGAATAC 409 |||||||| ||| Sbjct 19 CCTGGGGAGTAC 8 >seq263711 Length=515 Score = 179 bits (198), Expect = 1e-42 Identities = 243/336 (72%), Gaps = 2/336 (1%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 |||| | ||||||| ||||||||| | |||||||||||||||||||||||| | ||| | Sbjct 98 TACCATACGAATAAGGACCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGAAGGTCC 157 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||| |||| ||| |||| ||||| | ||| |||| | | |||| | ||| Sbjct 158 GGGCGTTATCCGGATTTATTGGGTTTAAAGGGAGCGTAGGCCGGAGATTAAGTGTGTTGT 217 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||| ||| ||| | || ||||| |||| || |||| | | Sbjct 218 GAAATGTAGACGCTCAACGTCTGACTTGCAGCGCATACTGGTTTCCTTGAGTACGCACAA 277 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 | || ||||||| |||||||| ||||||||| |||||||| || |||| || || | Sbjct 278 CGTTGGCGGAATTCGTCGTGTAGCGGTGAAATGCTTAGATATGACGAAGAACTCCGATTG 337 Query 243 CGAAGGCAGCCCCCTGGGATAACA-CTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 |||||||||| | |||| || |||||||| | || |||| | | ||| | | |||| Sbjct 338 CGAAGGCAGCTGAC-GGGAGCGCAACTGACGCTTAAGCTCGAAGGTGCGGGTATCGAACA 396 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||| | | |||||||| Sbjct 397 GGATTAGATACCCTGGTAGTCCGCACAGTAAACGAT 432 >seq264214 Length=216 Score = 150 bits (166), Expect = 5e-34 Identities = 154/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 121 GTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA 180 |||||||||| ||||| ||||| |||| ||| | ||||| ||||| | | Sbjct 201 GTGAAATCCCGGGGCTCAACCTCGGAACTGCCTCCTAAACTGCTAAGCTAGAATCCTGGA 142 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 |||| | |||||||||| |||||| ||||||| ||||||||| ||| |||||||| | Sbjct 141 GAGGTGAGTGGAATTCCTAGTGTAGAGGTGAAATTCGTAGATATTAGGAAGAACACCAGT 82 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 ||||||||| | | |||| | ||||||| | | |||||||||||||||| ||| Sbjct 81 GGCGAAGGCGACTCACTGGACAGGTATTGACGCTGAGGTGCGAAAGCGTGGGGAGCGAAC 22 Query 301 AGGATTAGATACCCTGGTAGT 321 ||||||||||||||||||||| Sbjct 21 AGGATTAGATACCCTGGTAGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1285437248576