Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq71608 183 4e-44 seq134406 176 6e-42 seq10961 176 6e-42 seq122253 149 9e-34 seq224456 116 5e-24 >seq71608 Length=1524 Score = 183 bits (202), Expect = 4e-44 Identities = 192/251 (76%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| |||||||||||||||| || ||||| || |||| | || || ||| Sbjct 837 TTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTC-GTGTTTGCAGA 779 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||||| | || | ||| ||||| || |||| | Sbjct 778 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAGCTTAC 719 Query 122 ----CACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCC 177 || ||| |||||| || ||| | ||||||||||||||||||| ||||||||||| Sbjct 718 GGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCATTTTGCC 659 Query 178 GAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTC 237 | |||||| ||| ||||| | | | |||||| |||||||||||| |||||||||||| Sbjct 658 TAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACCCAACCACCTGTGTC 599 Query 238 GGTTTACGGTA 248 ||||| |||| Sbjct 598 GGTTTGGGGTA 588 >seq134406 Length=645 Score = 176 bits (194), Expect = 6e-42 Identities = 192/253 (76%), Gaps = 8/253 (3%) Strand=Plus/Plus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||| |||| |||||||| || ||| | | || |||| Sbjct 47 TTAACCTTCCGGCACCGGGCAGGTGTCACACCGTATACGTCATCTTTCGAT-TTAGCACA 105 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA- 120 | ||||||||||| ||||||||| | || || || ||||| || ||| ||||| Sbjct 106 GTGCTGTGTTTTTAATAAACAGTCCCAGCCACCTGGTCACTGCGGCCGCCATTCGCTCAG 165 Query 121 -----ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTG 175 | | || | ||| | ||| ||| ||||||||||||||||||| | |||||| Sbjct 166 AGAGTAAATCTCAT-CACAAACAGCGGCGTACCTTCTCCCGAAGTTACGGTACAATTTTG 224 Query 176 CCGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTG 235 |||| |||||| ||| ||||| | | | ||||||||||||||||||||||||||||||| Sbjct 225 CCGAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTAGTATTCTCTACCTGACCACCTGTG 284 Query 236 TCGGTTTACGGTA 248 ||||||| |||| Sbjct 285 TCGGTTTGGGGTA 297 >seq10961 Length=594 Score = 176 bits (194), Expect = 6e-42 Identities = 192/252 (76%), Gaps = 6/252 (2%) Strand=Plus/Minus Query 2 TTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACG 61 ||| |||||| ||||||||||| |||| || ||||| || ||| | | || ||| Sbjct 444 TTAACCTTCCGGCACCGGGCAGGTGTCACACCCTATACGTCCTCTTGC-GAGTTTGCAGA 386 Query 62 GACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAA 121 | ||||||||||| ||||||||| | || || || ||||| || || |||||| Sbjct 385 GTGCTGTGTTTTTAATAAACAGTCCCAGCCACCTGGTCACTGCGGCCCTCATTCGCTCAA 326 Query 122 ----CACGTCGT-TCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 || ||| | |||| |||| ||| ||||||||||||||||||| | ||||||| Sbjct 325 GGAGCAAGTCCTATCACGAGCAAGGGCGTACCTTCTCCCGAAGTTACGGTACAATTTTGC 266 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 ||| |||||| ||| ||||| | | | |||||||||||||||||||||||||||||||| Sbjct 265 CGAGTTCCTTCACCCGAGTTCTCTCAAGCGCCTTAGTATTCTCTACCTGACCACCTGTGT 206 Query 237 CGGTTTACGGTA 248 |||||| |||| Sbjct 205 CGGTTTGGGGTA 194 >seq122253 Length=872 Score = 149 bits (164), Expect = 9e-34 Identities = 186/252 (74%), Gaps = 15/252 (6%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTA---CCGTCTTCG 57 |||| ||||| ||||||||||||||||| || ||||| ||| ||| ||| ||| | Sbjct 604 CTTAACCTTCAGGCACCGGGCAGGCGTCAGGCCCTATACGTCGTCTTGAAGCCGACTTAG 663 Query 58 CACGGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGC 117 || | ||||||||||| |||||||||||| ||| || || ||| || Sbjct 664 CAGAGCCCTGTGTTTTTGCTAAACAGTCGCTACCCCCTGGCCTGTGCCCCC--------- 714 Query 118 TCAACACG-TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGC 176 |||| | | | | ||| | || ||| | |||||| |||||| ||||| | || ||||| Sbjct 715 TCAAAATGCTTGCGCACAATGAG-GGC-CTCCTTCTTCCGAAGGTACGGAGGCAATTTGC 772 Query 177 CGAATTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGT 236 ||| |||||| | ||| ||| | | | |||||| |||| |||||||||||||||||||| Sbjct 773 CGAGTTCCTTCAGGACACTTCTCTCAAGCGCCTTGGTATACTCTACCTGACCACCTGTGT 832 Query 237 CGGTTTACGGTA 248 |||||| |||| Sbjct 833 CGGTTTCGGGTA 844 >seq224456 Length=170 Score = 116 bits (128), Expect = 5e-24 Identities = 129/168 (77%), Gaps = 12/168 (7%) Strand=Plus/Minus Query 20 GCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTGTGTTTTTAGTAA 79 ||||||||||| || ||||| ||| ||| | | ||||||| | |||||||||||||||| Sbjct 170 GCAGGCGTCAGACCCTATACGTCGCCTTGCGG-CTTCGCAGAGCCCTGTGTTTTTAGTAA 112 Query 80 ACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTCGTTCACCAGCAG 139 |||||||| ||| ||| ||| ||| ||||| | || | | ||||| | Sbjct 111 ACAGTCGCCACCCCCTAGTCTGTGCCCCCACCG-----TAAAGTTGCC-TTCACG----G 62 Query 140 TGGCACCCCTTCTCCCGAAGTTAC-GGGGCCATTTTGCCGAATTCCTT 186 ||| ||||||||||||||||||| ||||| |||||||||| |||||| Sbjct 61 TGGGCCCCCTTCTCCCGAAGTTACGGGGGCAATTTTGCCGAGTTCCTT 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692228564762