Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lytechinus_20variegatus_20[genbank_20GCA_5F000239495.2_202015-03-11] 322,794 sequences; 1,061,195,396 total letters Query= AAMG01000599.1 Length=180 Score E Sequences producing significant alignments: (Bits) Value seq71608 246 3e-63 seq10961 168 6e-40 seq134406 140 3e-31 seq122253 84.2 2e-14 seq224456 77.0 3e-12 >seq71608 Length=1524 Score = 246 bits (272), Expect = 3e-63 Identities = 138/139 (99%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 20 GAGGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 79 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 705 GAAGGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTAT 764 Query 80 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 765 TAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGT 824 Query 140 GCCGGAAGGTTAATTGATG 158 ||||||||||||||||||| Sbjct 825 GCCGGAAGGTTAATTGATG 843 >seq10961 Length=594 Score = 168 bits (186), Expect = 6e-40 Identities = 119/136 (88%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 23 GGACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAA 82 ||||||||||| | ||| ||| || || || |||||| |||| ||||||||||||| Sbjct 315 GGACTTGCTCCTTGAGCGAATGAGGGCCGCAGTGACCAGGTGGCTGGGACTGTTTATTAA 374 Query 83 AAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCC 142 |||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||| Sbjct 375 AAACACAGCACTCTGCAAACTCGCAAGAGGACGTATAGGGTGTGACACCTGCCCGGTGCC 434 Query 143 GGAAGGTTAATTGATG 158 |||||||||||||||| Sbjct 435 GGAAGGTTAATTGATG 450 >seq134406 Length=645 Score = 140 bits (154), Expect = 3e-31 Identities = 112/135 (83%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 24 GACTTGCTCCGTAAGCTCATGCCGGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAA 83 || || ||| | ||| ||| ||| || || |||||| |||| |||||||||||||| Sbjct 175 GATTTACTCTCTGAGCGAATGGCGGCCGCAGTGACCAGGTGGCTGGGACTGTTTATTAAA 116 Query 84 AACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCG 143 ||||||||||| ||| || |||||| |||||||| |||||||| |||||||||||||| Sbjct 115 AACACAGCACTGTGCTAAATCGAAAGATGACGTATACGGTGTGACACCTGCCCGGTGCCG 56 Query 144 GAAGGTTAATTGATG 158 ||||||||||||||| Sbjct 55 GAAGGTTAATTGATG 41 >seq122253 Length=872 Score = 84.2 bits (92), Expect = 2e-14 Identities = 74/92 (80%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA----AAGTGGACGTATAGGGT 123 ||||||||||| |||||||||| |||||| || || ||| ||||||||||| Sbjct 693 GCGACTGTTTAGCAAAAACACAGGGCTCTGCTAAGTCGGCTTCAAGACGACGTATAGGGC 634 Query 124 GTGACGCCTGCCCGGTGCCGGAAGGTTAATTG 155 |||||||||||||||||| ||||||||| || Sbjct 633 CTGACGCCTGCCCGGTGCCTGAAGGTTAAGTG 602 >seq224456 Length=170 Score = 77.0 bits (84), Expect = 3e-12 Identities = 57/67 (85%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127 ||||||||||| ||||||||||| |||||| || || ||| |||||||||||| ||| Sbjct 104 GCGACTGTTTACTAAAAACACAGGGCTCTGCGAAGCCGCAAGGCGACGTATAGGGTCTGA 163 Query 128 CGCCTGC 134 ||||||| Sbjct 164 CGCCTGC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475309014514